When an American officer who served in Iraq blows up in a Philadelphia train station, the Fringe Division investigates and determines that something turned the man into a living bomb. Peter and Olivia travel to Iraq to determine if Peter's contacts can shed some light on the situation.

A Chinese Triad is using illegal aliens to breed parasitic worms that eventually kill their hosts. When a ship runs aground, Fringe Division learns of the operation and tries to locate a second ship before the passengers on it suffer a slow, agonizing death.

Newton, concerned about the consequences of a distressing development involving a high-ranking official, is forced to call to action a sleeping shapeshifter. As Walter and the rest of the team gather evidence, they move the investigation to Massive Dynamic, where Olivia goes on high alert and Walter finds himself in a perilous situation.

When a serial kidnapper “over there” strikes again, the emotional and familiar case hits home for Colonel Broyles, sending a determined Olivia to uncover additional details about the abductions. In the meantime, Olivia fights on and reunites with Henry to enlist his services on an intense and covert mission to return home.

As the story shifts back to life “over there,” the absence of Colonel Broyles changes the dynamic of the Fringe Team as they investigate a bioterrorist armed with an insect that has a taste for human flesh. Meanwhile, alternate Olivia is reunited with her beau, and Walternate remains determined to save his world but discovers there are certain lines he will not cross.

The beginning of the end is triggered when Walternate finds a way to wreak havoc “over here."