Stardate: 48439.7. As the Maquis crewmembers begin to integrate themselves into the Starfleet crew, Voyager becomes trapped in a quantum singularity.

Stardate: 48532.4. During an away mission in the search for dilithium crystals, Neelix is attacked and his lungs are surgically removed by a disease-ridden race of aliens known as the Vidiians. His only hope for survival is if the crew of Voyager can get them back.

Stardate: 48546.2. In the search for omicron particles to boost the ship's energy supplies, Voyager inadvertently injures a space-faring life form.

Stardate: 48623.5. While investigating an asteroid belt containing a new element, Harry Kim is pulled into a 'subspace vacuole' and switched with a dead body. Soon after the body is revived the crew learn that the asteroid belt is the graveyard of an alien culture that transports its dead in the belief that they evolve into a higher state of consciousness. Harry's appearance on the homeworld begins to raise questions about the existence of their afterlife.

Stardate: 48734.2. After Chakotay and Tuvok are injured in a shuttle accident, a non-corporeal life form begins to wreak havoc on Voyager by infiltrating the minds of the crew and altering the ship's systems one by one.

Stardate: 48975.1. After discovering a 1936 Ford truck from Earth floating in space Voyager discovers a series of cryo-statis chambers containing abductees from Earth during the 1930's, including Amelia Earhart and her navigator.

Stardate: 49005.3. A young Kazon trying to earn his name and place among his people kidnaps Chakotay.

Stardate: 48892.1. When the Doctor is activated during a Red Alert, he learns that the ship has been abandoned, and that only B'Elanna Torres and an injured Captain Janeway are left on board. Soon afterwards, Lt. Barclay appears and tells him that his entire time on Voyager is an elaborate simulation, and he's really a holo-engineer by the name of Zimmerman on Jupiter station in the Alpha Quadrant, who has been trapped on a holodeck for six hours. If he does not destroy Voyager's warp core and end the program soon he will die.

Stardate: 49011. Harry Kim arises one morning to find he is back in San Francisco on Earth with his girlfriend Libby. In order to help him restore reality, he enlists the help of a shady figure in France by the name of Tom Paris, who has no idea who Harry is.

Stardate: 49164.8. The crew of Voyager make contact with the Caretaker's mate, Suspiria. Kes meets with the descendants of other Ocampa on Suspiria's array that left the homeworld over 300 years ago. Soon, her mental abilities begin to grow to a point where she can no longer control them, and nearly kills Tuvok in the process.

Stardate: 49548.7. An accident in a plasma cloud duplicates Voyager after they are attacked by the Vidiians. During the aftermath, the ship is severely damaged, Ensign Wildman's baby dies and Harry Kim is sucked into space through a hull breach.

Stardate: 50126.4. After falling ill to what appears to be a repressed memory Tuvok must perform a mind-meld with Captain Janeway in order to survive. The meld takes them back to when Tuvok was a junior science officer aboard the U.S.S. Excelsior under the command of Captain Hikaru Sulu.

Stardate: 50203.1. After Voyager encounter a telepathic species, B'Elanna starts having powerful dreams that depict the life of a woman and her lover in a time of great political and social upheaval.

Stardate: Unknown. Both Voyager and a 29th century Federation Timeship, the Aeon are pulled back in time to Earth in the late 20th century. The Timeship Aeon crashes in Arizona during the 1960's, while Voyager appears in orbit around Earth during 1996.

Stardate: 50312.5. While trying to rescue Paris and Tuvok, Torres and Chakotay are captured by a gang of weapons smugglers who believe that they are from the government.

Stardate: Unknown. After returning from a first contact mission, Janeway, Neelix and the Doctor must retake Voyager from an infestation of microorganisms that grow to an alarming size.

Stardate: 50693.2. When the doctor tries to improve his personality by incorporating the psychological profiles of famous and historical people, he is overwhelmed by their dark sides and begins exhibiting signs of a split personality, one the regular doctor, and the other dark and evil. Kes asks to leave Voyager when they encounter a race with vast knowledge of the region of space they are currently exploring.

Stardate: Unknown. Neelix is pushed to the limits when Tuvok's attitude becomes too much to bear while the pair is on an away mission to help evacuate a Nezu planet, which is being bombarded with asteroids.

Stardate: Unknown. An alien palaeontologist discovers a common ancestral link between his people and humans. He believes that this proves that his people (the Voth) evolved on Earth and migrated to the Delta Quadrant millions of years ago, but his government is not as willing to believe his interpretation of the evidence.

Stardate: 50984.3. Voyager finally enters Borg space, only to discover a threat more powerful than the Borg themselves.

Stardate: 51003.7. The Voyager crew, allied with the Borg, prepare to battle the sinister alien Species 8472. But can an alliance between opinionated individuals and a collective race of consumers survive such fundamental differences?

Stardate: 51268.4. The Voyager crew finds its determination and morale challenged when trying to survive a brutal, long-lasting conflict with a race called the Krenim.

Stardate: 51425.4. While Chakotay and Paris remain on board Annorax's time ship, Janeway attempts to repair Voyager enough to pursue her crew members' abductors.

Stardate: 51652.3. The crew rescues a critically injured but aggressive Hirogen hunter, who threatens to have his allies destroy Voyager if Janeway comes between him the hunt for his latest prey: a single creature from Species 8472.

Stardate: Unknown. After having taken over Voyager, the Hirogen supply the crew members with artificial identities and subject them to violent holodeck simulations.

Stardate: 51715.2. The crew must stop an artificial holodeck rendition of a World War II battle from spilling onto the decks of the ship while simultaneously dealing with a Hirogen takeover.

Stardate: Unknown. 700 years into the future the Doctor must defend the crew of Voyager and set history straight when an alien race claims that the Warship Voyager was responsible for war crimes commited against their race.

Stardate: 51978.2. When an alien helps the Voyager crew decode the mysterious encrypted message from Starfleet, the crew learns the whereabouts of a secret experimental starship that may be able to get them back to the Alpha Quadrant within a mere matter of months.

Stardate: 52081.2. Traveling through a large area of space completely devoid of stars and civilizations, the Voyager crew copes with the prospect of long-term isolation.

Stardate: Unknown. A transporter accident merges some of Seven of Nine's nanoprobes with The Doctor's mobile emitter to create a 29th century Borg drone.

Stardate: Unknown. In the future, Harry Kim attempts to correct a mistake he made 15 years earlier, which had resulted in the loss of Voyager during use of experimental engine technology.

Stardate: 52619.2. When Janeway hatches a daring plan to steal technology from a crippled Borg ship, Seven is coerced into returning to the Borg collective.

Stardate: Unknown. A group of extremely intelligent aliens offers to help Voyager escape from a race of bounty hunters known as the Hazari, in exchange for Seven of Nine.

Stardate: Unknown. Under the guidance of the Doctor, Seven of Nine learns some social aspects of human dating.

Stardate: Unknown. Captain Janeway relates the story of her distant ancestor Shannon O'Donnell during the construction of the Millennium Gate on Earth during New Year's Eve 1999. She must convince the last holdout, local bookstore owner Henry Janeway to approve the plan.

Stardate: Unknown. After Kim beams an alien missile onboard Voyager it links up to the Doctor's systems and requests that it is allowed to complete its mission of mass destruction.

Stardate: Unknown. Voyager encounters another Federation starship, the USS Equinox, in the Delta Quadrant. But as an alien presence prepares an attack, Janeway begins to uncover the Equinox's sinister secret.

Stardate: Unknown. As Janeway's determination to capture Captain Ransom becomes an obsession, Ransom begins having second thoughts about his methods.

Stardate: Unknown. The ship is placed in danger when it comes under attack from a territorial race of aliens known as the Turei. While sheltering on a planet, Captain Janeway tries to make an alliance with its inhabitants, the Vaadwaur. However, she soon begins to think that the Vaadwaur may pose a bigger threat than the enemy above.

Stardate: Unknown. The crew of Voyager experience vivid memories and dreams of a battle they don't remember having, with an enemy they have never encountered.

Stardate: Unknown. Kes returns to Voyager in a state of rage, blaming Captain Janeway for her past. Using her expanded Ocampan powers in a fit of revenge, she travels through time to deliver the crew to the Vidiians.

Stardate: Unknown. News reaches Voyager through the up-and-running Pathfinder project that the Doctor's creator, Lewis Zimmerman, is critically ill. In an attempt to save his life, the Doctor's program is transmitted to the Alpha Quadrant, but once there, he finds Zimmerman does not want to be examined by an 'obsolete' EMH program.

Stardate: Unknown. Seven of Nine is contacted by Borg drones who have the ability to exist in a virtual realm that gives them freedom as individuals.

Stardate: 54014.4 - Partially transformed into Borg drones, Janeway, Tuvok, and Torres run a covert operation on board a Borg ship to infect the collective with a virus that will free subdued individuals from the hive's control.

Stardate: Unknown - Seven of Nine runs a series of holodeck simulations to explore her untapped emotions.

Stardate: 54732.3 - When the Doctor arranges to have his recently completed holodeck novel published in the Alpha Quadrant, certain aspects of the story hit too close to home among his shipmates.

Stardate: 54973.4 - Twenty-six years in the future, a regretful Admiral Janeway hatches an audacious plan to bring Voyager home sooner, rather than have it spend an additional sixteen years making its journey.