Dawson plays detective when Eve's mysterious ways, including breaking and entering and stealing, cause him to wonder about her reasons for being in Capeside, but the secrets he uncovers may drastically change the lives of others close to him. Meanwhile, Joey's misgivings of Rob lead her to crash his date with Andie but her good will backfires on her; and Jack goes against Jen's wishes and sets up a rendezvous for Henry.

Dawson is suspicious of Pacey's awkward behavior and misconstrues his actions when he learns Pacey has been spending time with Joey. Meanwhile, after rethinking the offer, Pacey cannot move forward with his no-strings-attached relationship with Jen, and Andie urges Jack to meet a gay student from a neighboring town who contacted him via the internet after seeing Dawson's news story.

Dawson makes the radical move of dropping out of film class to spend some time re-evaluating his teenage years. Back at Potter's, Joey is torn between attending Pacey's opening night and her date with A.J., who has come to Capeside for the evening. At the play, Andie must take over as director when the faculty director takes ill; and Jen agrees to meet Henry, but she throws him another block by bringing Grams as her date.

Joey is chosen to be part of a group of students to paint a school mural, but when hers is defaced before the unveiling, Dawson offers words of encouragement while Pacey takes action and risks suspension when he goes in search of the culprit. Meanwhile, when Andie's PSAT scores rank among the best in the country, she gambles with everything she has worked for and comes clean to Principal Green about the previously stolen test; and Pacey moves in with Deputy Doug when their sister and her kids move back into the Witter house.

Joey relies on the support of Pacey and A.J. to rally the students in protest against the school superintendent after he forces Principal Green to resign for expelling the student who destroyed Joey's mural. Meanwhile, Dawson and Gail both go back to their respective places in back and in front of the camera to produce a piece about the ongoing school protest which ruffles more than a few feathers of the school board hierarchy.

In a story that replays the same day's activities from three different perspectives (as in the 1999 movie ""Go""), Joey and Pacey vacillate on the ways to tell Dawson about their feelings for each other. But when the truth does come out, Dawson's reaction is the one they hoped they wouldn't get. Meanwhile, Andie, who thought she was over Pacey enough to date, accepts a date with Capeside visitor Will, but their first date is ruined when she also learns about Joey and Pacey.

After an emotional day filled with love, tears and wedding vows, Joey ultimately must choose between her love for Dawson and her new feelings for Pacey. Across town, Grams talks about love and regret with Jen, while Jack and Andie make a decision to drive all night so that Jen can see Henry one last time.

Everybody starts to think about their future, and how they are getting into college. Joey's concerned about Pacey not having grades good enough to get into college. Drue makes everybody think it's Jen's birthday so he can make a party. Andie takes over Jack's applications and drives him crazy with her obsession over it. Gretchen is applying for a job as bartender at Mrs. Leery's restaurant, and doesn't exactly tell what happened (or what will happen) with college.

Joey can't find a moment alone to study or deal with her feelings. Dawson's collaboration with Brooks begins, rejuvenating his film making spirit. Jen takes Jack to a "Gay-Straight Coalition" meeting but she seems to fit in with the crowd more than Jack does.

The results of the Senior Polls have ramifications for Dawson, Joey, and Pacey, as the three try to ignore the tauntings of pollmaster Drue Valentine. While Pacey and Joey try to eke out some time alone together, Dawson finds his night alone with Gretchen more awkward than he'd expected. Gretchen learns that Joey lied to Dawson about sleeping with Pacey and is angry and Joey is forcing her to lie to her boyfriend. Meanwhile, Jack's suspicious when Jen drags him on some mysterious errands, and his suspicions are confirmed when he realizes just what she's up to.

Accepted early to USC, Dawson finds his last night in Capeside has arrived much sooner than everyone had originally anticipated. While Dawson looks forward to spending the evening with Joey, Jack and Jen, Mitch has other ideas. Meanwhile, Dawson's not the only goodbye Jen has in store for her, as she bids farewell to the house she's been sharing with Grams. Finally, Joey says goodbye to Dawson in her own way.

Pacey gets a job at a bar and meets an attractive Hispanic waitress named Karen. Although Karen has a very non-friendly boyfriend, that doesn't stop Pacey from feeling attracted to her. Dawson arrives to visit Joey, and is misled by Audrey when she decides to set her sights on him herself. Jen's compassion gets her to help Charlie and be on the college radio station.

Jen and Audrey are tempted to risk their new relationships with Dawson and Pacey after interviewing a couple of cute musicians. Meanwhile, Pacey's caught by surprise when he realizes Jack has taken him to a gay bar, and Dawson's curious upon seeing Joey's reaction when she catches Professor Wilder on a date.

As summer approaches, everyone gets ready for various travels. Dawson prepares to head out for LA with Audrey, while Jack and Jen get ready for their Costa Rica vacation. Left behind in Capeside for the summer, Joey and Pacey lament their fates - until they make a crucial last-minute decision that changes everything.

Dawson & Joey's reunion leads to an evening of truth and intimacy, which is ruined when Dawson receives a phone call from another woman. Pacey gets a job interview that could change his life. Sparks fly between Jen and CJ, a handsome new peer counselor she meets at school.

Dawson's manages to 'get the girl' when a producer visits the "Wicked Dead" movie set to fire Natasha and close down production. Audrey is excited when asked to be the lead singer of Emma's band but is crushed when Pacey misses the gig. Joey demands the truth from Eddie.

Dawson comes through with No Doubt concert tickets, but he and Natasha's first public date ends in a brush with the law. Joey and Eddie have to sneak into the concert, while Pacey come to blows with CJ at the concert when it is revealed that he slept with Audrey.

Back in LA, Dawson is asked by the studio to direct re-shoots but is conflicted about being disloyal to his mentor. Meanwhile, Joey hasn't heard from Eddie since Christmas and finds his apartment empty; Pacey starts skipping work to spend time with Emma; Jen's insecurities as a peer counselor are compounded when C.J. is assigned to train her.

After agreeing to pose as Pacey's sister at a business party, Joey demands to be taken home. When Pacey makes a quick stop at a local K-Mart they are accidentally locked inside the store. They're forced to spend the night there and talk about their friendship and relationship, both past and future. After the night is over they are both left to ponder what the future has in store for them.

When Dawson gives up his dream of making his film, a strong-minded Joey rallies the old group back to Capeside to help Dawson begin production before pursuing her dream of traveling to Paris. Jen, Jack and Grams must say their goodbyes and leave for New York.