Ran, Sonoko, and Conan are at the Tropical Land ice rink where they meet a group of people: Yasuharu Misawa, Izumi Sano, Yoriko Komatsu, Chihiro Itami, and Kunitomo Oda. Chihiro goes to the women's bathroom where she is being followed by a cloaked figure.

Bloody marks are discovered at and near the crime scene. Conan puts Kogoro to sleep to reveal that the culprit.

Saizo Kano, known as the Organizer of Shadows, is shot to death by his subordinates, Sadao Kujirai, Korehisa Kanie, and Teruyoshi Kameda. In the present day, while celebrating their last heist on a luxury cruise ship, Kano’s crew is picked off one by one by a mysterious killer. The stakes are raised when Heiji is thrown into the Pacific Ocean while investigating and a bomb is discovered to be hidden on the ship. Is there something more sinister afloat, or has Kano returned from the dead to enact his vengeance 20 years later?

Richard is called to investigate a suspicious murder where three people admit to killing a man for hitting him on the head.

On the way home from school, Conan and Haibara find Gin's Porsche 356 on the street and places a covert listening device in it. Conan hears that a Black Organization member codenamed Pisco is ordered to assassinate someone at a party hosted at Haido Hotel.

Conan investigates and reveals to Haibara that the purple handkerchief will narrow down the suspects.

Haibara climbs to the top of the chimney only to be confronted by Gin and Vodka.

Conan and the group go to a coffee shop. Nearby, two men are having a meeting. One of them gets up to go to the bathroom, and while he's gone, a truck slams into the coffee shop and smashes the other man who was still seated. Conan realizes it was a planned murder and finds evidence through the truck.

Kogoro is invited by Yoshinori Kana to his home to investigate an unknown stalker harassing his wife, Misaki, who leaves mysterious gifts and letters.

The case is solved, the mysterious man was figured out to be a statue hanged by a fishing rod.

The Detective Boys are walking home one day when they discover two s shaped hooks and a ring with the initials M to A, a wedding ring. They decide to investigate seeing it as an S.O.S.

One day, The Detective Boys were bored so they picked up receipts in a convenience store to guess what the people are buying for dinner. George picks up a weird receipt with food items, a dust bin, a container, a handler light, rechargeable batteries, thin lytax gloves, and chlorine.

Kogorou, Ran, and Conan are invited by the hostess of a car accident charity named Shou Beniko. While driving, they find a message from the Phantom of the Cursed Masks who tells them they should not go.

Kogoro, Ran, and Conan are driving by when an arrow almost hits Kogoro. Afterwards, they stay at a hotel when an actor is found dead with a bullet in his head and all the evidence suggests it is the work of an outsider.

Conan later solves the case by showing how the culprit tried to place false evidence to lure the police to think it was an outsider.

Kogoro is invited to a house as to impress the client's mother who is a finance trader, simply a loaner. Later, loaner is murdered and with the clues, the suspects are her son, daughter, or maid.

Ran's strange behavior causes Conan to suspect that she knows his identity as Jimmy. Later on, the Detective Boys are taken by Agasa on a camping trip.

The Detective Boys realize that the riddle is a reference to shogi and that the dragon refers to a promoted rook. They take the direction a rook is placed on the shogi board and escape the cave.

Vi reveals the gun was a fake and reminds Conan the threat that the Black Organization poses.

The police are unable to find the source of the poison from the drinks. As they are able to rule the death as a suicide, the black knight declares it was a murder and reveals his identity.

Shinichi takes Ran to a fancy restaurant in order to confess his love.

After checking the company's mascot, Shinichi confirms Satoru to be the murderer, thus locking the two in a game of cat and mouse.

A girl named Yuuki Haruna asks Kogoro Mouri to search for a man named Shuugo whom she texts with on her pager.

Conan investigates and realizes how the pranks were done and who is attempting to scare Haruna away.

Ran and Sonoko are on their way to a restaurant when Chie Yoshino allegedly falls asleep in her car but nearly misses them at the last moment. They soon meet Akio, Chie’s husband, but Ran finds his actions suspicious.

Kogoro wins the city lottery for first place and the reward was an all-expense paid vacation in a hotel and Conan and Ran tag along. In the hotel, a car exhibition is about to do its grand opening.

After investigating, Conan reveals that a cover was used to direct the fume into the car. He reveals who the culprit is.

Kogoro is relaxing at a luxury hotel. After dinner, a drunken Kogoro goes missing, prompting the others to search for him. Eri calls his phone, hears it ringing from the inside of Ritsuko’s room, open the door with the chain lock in place, and find Ritsuko strangled to death. Worst of all, Kogoro emerges from the bed, much to everyone’s shock.

Eri continues to pretend Kogoro is the killer but only to fool real guilty party.

Conan, Ran, and Kogoro are riding a bonnet bus, driven by bus operator Mamoru Kajita and guided by Touko Natsume, through the mountains. On the bus already is the president of the Kagekura youth club, Takurou Yabe. The bus stops to pick up other travelers including Souchiki Okumura, who forces Kogoro out of his seat. He argues with Yabe then drinks from his water bottle and collapses dead from poison.

Ran reveals that the person who ran past her after Funaki was killed was Yabe. Kogoro catches him but Yabe maintains his innocence.

Mouri, Ran, and Conan are staying at a hotel where they meet the twins from the case of the cursed mask. Later, an actress comes and causes trouble. The next day, she is found hanged in her room.

Conan notices that this is not a suicide but a murder. He later proves that the culprit hang-glided to the hotel and went back by stowing in the trunk of a car.

A serial arsonist sets huge fires across the city and Takagi and Miwako with the Detective Boys are out to solve it.

After Ai reveals the pattern of the arsonist attack, Ayumi, Genta, and Mitsuhiko run into the arsonist who attempts to kill them.

Kogoro is carried by Ran and accompanied by Conan one night picking him up from a bar. While walking they witness a fight in an apartment. The next day a murder occurs. One of the man who's heard arguing comes to Moore for help to prove his innocence. The man has made good suggestions on where to find evidence which are in fact too good.

Kogoro, Ran, and Conan are invited for a ceremony for a ropeway which is built through a giant Goddess Statue on the mountains by Doumouto Guze. They learn that there is a rumour about a curse by the goddess' anger and Kogoro was invited to disprove it. After riding through the ropeway on the opening day, Doumouto, who has disappeared from the ropeway cart, is later found dead on the goddess' hand.

The Detective Boys excluding Ai, are traveling through a winding path on Mt Ryushin. There they witness a derailed car fall off the mountain. The man has died and through the evidence, Conan concludes another car rammed into that car.

Kogoro, Ran, and Conan came as the substitutes for Serena and her father, the Suzuki president, and decided to attend a tea meeting at the Aonogi house. At the backyard of the mansion, there was a pond that shined in five colors. And there was a bridge which led to the tea room. While they were enjoying the pond’s colors something unusual happened… The headmaster died in the tea room, the same way as the legend.

Conan searches for clues to who murdered the Headmaster busily and finally figures out the trick that was used.

The Detective Boys decided to go mushroom picking in the mountains. And during it, Genta got lost in the hunting area.

Ai deduces that if they reveal themselves, the hunter trying to get rid of them will shoot them and say that he thought they were bears. So Ai and Mitsuhiko leave a clue for Conan in the form of different types of mushrooms that tells him who the killer is.

Kogoro, Ran, and Conan are attending a dolphin show when a murder occurs in the hotel.

While Kogoro, Ran, and Conan are driving near the ocean, their car breaks down, prompting them to ask for help at a house which belongs to famous lawyer Kensuke Tachibana. There, they meet secretary Yuuichi Sakuraba, his caretaker Yaeko Kamei, his wife Yuki Tachibana, his office's accountant Noriko Sugimura, and lawyer Fumio Fujisawa. As the day progresses, Kensuke explains to Kogoro that he’s been receiving threatening letters from someone with the initials “T.K.”

Conan believes that Kumada was met with foul play. Conan puts Kogoro to sleep, deducing that the killer drugged Kensuke while he was out with Kumada.

The police inform Kogoro about a serial offender attacking women wearing ganguro makeup. According to the victims’ testimony, their attacker stood at 150 centimeters tall. Kogoro mentions a similar case 20 years ago where female high school students were run over, shocking Megure.

Megure reveals a case in the past which is why he was so anxious.

The Phantom Thief Kid stands on top of a building with his butler. He discusses the time he was almost caught by a famous Detective in the East, Shinichi Kudo. He plans to "steal" the clock tower. Although, he leaves it standing with a code upon its hands, saying "I will not give this clock to anyone".

Conan becomes suspicious of Kogoro's latest client, a woman looking for an old lover, even more so when a murdered man is found clutching a photo of her.

After a thorough investigation, Conan tranquilizes Kogoro and reveals the culprit.

Conan, along with Heiji, Ran, and Kazuha travel the Isle of Mermaids looking for Saori Kadowaki, who had sent a letter to Heiji asking him to save her from being killed by a mermaid.

Conan and Heiji investigate Naoko's brutal murder and discover a trail of fish scales that suggest Naoko's killer came from the sea.

With Kogoro stunned, Conan clears the suspects who were accused of murder, then explains that each victim was called out by the person they trusted and was lured with the promise of a personal gain before being murdered, and reveals the killer.

A boy named Rintaro asks the Detective Boys to investigate on a strange man named Yuuji Kamekura. Rintaro explains that Yuuji appeared one day at his family restaurant claiming he owes Rintaro's grandfather a favor and would like to work at the restaurant. Yuuji soon after begins living with the family and helps them improve the restaurant to the point the family are constantly busy with the customers.

Sonoko, Ran, and Conan are at the arcade where they meet their high school English teacher, Jodie Starling who is an avid gamer. Jodie introduces Ran to a virtual reality fighting game which uses mechanics to simulate the pain of a real fight. Ran loses to a gamer named Kengo Bitou who taunts her in her lost. Bitou plays the game again his rival, Takayasu Shimizu; The battle is projected on a large screen. Bitou's avatar overwhelms Shimizu's but stops at the climax of the match. The people in the arcade realize Bitou is dead and the police are called in.

Conan investigates and learns the method and the culprit who murdered Bitou.

Ran, Sonoko, and Conan attend Muneyuki Mino's pottery class to make pretty mugs. Muneyuki is pleased to see Ran as her father Kogoro solved a murder case at The Forgemaster's estate. Later on, Muneyuki displays a dark personality.

Conan finds something suspicious about the pendant on the necktie and figures out Muneyuki and his methods.

Conan and the Detective Boys are taking the transit bus to a ski resort where they meet Araide and Jodie aboard the bus. Soon after, the bus is hijacked by two armed men who uses the passengers as hostages and demands the city to release their boss.

Conan figures out who the accomplice is. The Detective Boys are able to inform the driver to stop suddenly which allows Conan to apprehend the criminals.

Mouri Kogoro accepts a case to help to find out who has been sending threatening phone calls and letters to a man named Mitsuo Yoshimura. On the way to Yoshimura's apartment with his friend Joji Ueda, Kogoro and Conan witness Yoshimura fall to his death.

Agasa takes the Detective Boys to a neighbor named Teruya Kanou who is giving away his belongings before moving to England. While there Kanou's Papillon goes missing when the longcase clock strikes twelve and chimes twelve times.

Conan notices that there is glass wool, which muffles sound, in the incinerator and realizes who the culprit is.