As Conan and Ran are waiting for a meeting with Eri, they meet Sera, who is investigating Rumi Kitao's boyfriend, Kenya Settsu, about adultery. Thinking that Kenya will make a move upon seeing Ran, Sera has Conan and Ran approach the couple upon the pretense of needing a meal. However, Kenya doesn't seem to be interested in Ran and asks Ran to accompany Rumi to wake Waka, Kenya's ex-girlfriend. Rumi and Ran have to open Waka's apartment with a key when no one answers. Later, Ran finds Waka on the bathroom floor, but she collapses herself due to chloroform in the air.

Ran has to open Waka's apartment with a key when no one answers. Later, Ran finds Waka on the bathroom floor, but she collapses herself due to chlorofoam in the air.

While practicing penalty kicks, Sanada's soccer ball accidentally hits Kou while he's riding his bike past the park, injuring Kou's ankle. Kou is upset and makes Sanada promise to play his next match and score a goal using his right leg.

Ran is almost attacked by "The Hooded Man" after staying late at school for her extracurricular activities but defends herself. A scream is heard and Conan correctly deduces the man to be the aforementioned criminal who is arrested. They manage to save his latest victim, Mizuki Tachibana, but her friend, Yoko Katsuragi, is found bludgeoned to death, allegedly by the same man. He denies involvement but the similarities in the previous cases are too great to ignore. After finding unusual clues, Conan puts Kogoro to sleep to reveal that Mizuki killed Yoko. Mizuki was attacked by the Hooded Man but saw it as an opportunity to frame him for Yoko’s murder. As evidence, Mizuki has been followed by Ran for the majority of the time; she didn‘t have time to dispose of the clothes and weapon used in the crime, meaning she is still in possession of them. Mizuki confesses that Yoko took everything, including her boyfriend, from her.

Deciding to go bowling after they are rained out for tennis, Ran, Sonoko, Masumi, and Conan are met by Makoto, who engages Sera in a fight after mistaking her for a boy interested in Sonoko. After this is straightened out, we learn that he was attacked by teacher Masahiro Tanba, who was drunk. His coworker Sunami Masaki took him to the car to calm down. Makoto soon leaves to nap in the car, not finding bowling to be his strong suit. After a while, math teacher Michiko Monna becomes worried about Tanba, and in going to check on him, finds him missing. They all check around the local bars, but the missing teacher is found drowned in a portable toilet, and Makoto becomes the prime suspect due to the strength required for such a feat. He also had the opportunity, remaining in the parking lot during the estimated time of death.

Sunami discovered the missing Tanba in the toilet in the parking lot of the bowling center. When Sera and Conan examine the body they're surprised to see the cause of death is drowning.

Sonoko has decided to introduce Makoto to her parents. But while her father wholly approves of Makoto, especially as he is a fan of martial arts competitions himself, her mother, in turn, is strictly against a union between her younger daughter, as the prospective heir of the Suzuki Corporation, and an (in her eyes) uneducated, fight-obsessed never-do-wel.

Jirokichi learns of Makoto's victory record and swiftly changes his mind about the young man's offer and sends a demonstration video to Superintendent Chaki and Inspector Nakamori. However, amidst the slack-jawed policemen witnessing Makoto's fighting prowess lurks Kaitou Kid in disguise, who merely shows amusement at this new, if unusual challenge

A man was found murdered inside on his apartment! What love story will continue to develop among the Metropolitan police this time?!

Conan, Detective Takagi and Detective Sato are solving the mystery of the murder and tries to deduce who is murderer.

The Detective Boys are invited on the yacht of a wealthy businessman in Shinta City. The owner's wife invited the group to eat on the boat. During lunch, the woman shows guys two videos: one in which the husband swims with the help of a tablet and one in which the man has finally learned to swim. After a few hours, the boys see the entrepreneur jump into the sea and drown.

Ran visits her former school friend who now lives in a shared apartment house that goes by a bunch of scheduled rules. When Kogoro and Conan arrive to pick her up, one of the housemates is found dead on her bed, and suspicion is placed on the sole male housemate who had argued with her earlier.

Three different people have come forward claiming Taii belongs to them. Now it's up to the group to determine who is telling the truth.

After unlocking the door, Conan runs into the bedroom to find Teishi barely breathing after apparently falling off a chair and hitting his head while fixing a light, but something doesn't seem quite right...

After an unlucky while at the pachinko salon, Kogoro who walks about sees Conan at a small police office near a train-station. He walks in angrily only to find out that Conan was there only to return a found wallet. As they are about to leave the well-known comedian Rokusuke DoDonPa (real name: Rokusuke Tanigaki) walks in and announces to have murdered his chief.

Conan and Kogoro feel something is wrong with DoDonPa's all too convenient alibi. After taking on the guilt for a murder he didn't commit, DoDonPa becomes the man of the hour for trying to protect the reputation of his benefactor Tendo. Conan begins to strongly suspect him.

Conan, Ran, Sonoko, and Masami walk through the woods to a villa where Masami's brother was called to investigate the mystery of the Red Woman, a person who 15 years ago had murdered her husband because he had an affair and is reputed to be haunting the area. They meet with a group of friends who have made an annual visit to the villa because their friend Satoko died 3 years ago after which they have found her dead body. They describe how every year they had experienced strange events related to the Red Woman such as a window breaking and a room with red apples, a water heater filled with red rose petals, and a big splotch of red paint on their door. While Conan and Sera investigate the Red Woman's appearances in the woods, Ran, Sonoko, and the rest of the group split off to do house chores. When Ran, Sonoko, and one of the women Masaie go to take a bath, they found Hakuya (one of the guys) dead in a bath full of tomatoes.

Yui Uehara of the Nagano police arrives and learns of the murder case and details, such as the fact that no blood traces where found in the bathroom. As the other guests are in distraught over Masaie's death, their whereabouts are told to the detective. Why were tomatoes floating in the bathtub?

A search is conducted they don't find any knife-like objects or wigs. A woman is seen lurking outside again. The group checks some pictures which point to the red hints of all the previous 'pranks'. In one the pictures, Yui points out that on the day she was found she was wearing a red coat. She notices the ones who found the knife 3 years ago were Kansuke Yamato and Taka'aki Morofushi, while they were still attending police academy. Morofushi was sure that the bones which were found belonged to the red woman, while Yamato refused to accept it.

Conan, Haibara, Agasa and the Detective Boys spend the weekend at a cottage with the three sisters who own it and the little sister's boyfriend. After dinner, the little sister realized she ran out of medicine and her boyfriend volunteers to walk through the storm to bring her more. Once the storm has ended, everyone decides to look for him since he was taking too long, and they find him dead on the snow.

Conan, Ran, and Sonoko visit the hotel room where Masumi Sera is living. In the hallway on the 30th floor of Sera's hotel, various editors wait for famous romance author Hiura Keigo to finish his manuscripts. Later, Hiura's assistant Minazuki Chiori is found murdered in the room directly below Hiura's.

Author Keigo Hiura's assistant Chiaki Minazuki is found strangled to death in a hotel room directly below his. Conan and Sera are certain he committed the crime, but cannot find a hole in his alibi. After learning of the condition of Minazuki's room they get closer to the truth. After seeing and hearing more, Conan and Sera realize how Hiura manipulated his alibi...

Conan, Ran, and Kogoro visit the city of Kanazawa where Kogoro has been asked to provide a story for the city's Kaga-Hyakumangoku mystery tour. They participate in a scavenger hunt for clues that lead them to all sorts of sightseeing spots around the city. Along the way, Kogoro, Conan, and Ran notice a young couple that seems to visit the same places they are, as well as a purse snatcher that Kogoro was able to stop, appearing at a later site. It is revealed that the tour hosts were trying to get video footage of Kogoro to help promotions, and the couple and the purse snatcher and victim were all actors. However, at Kanazawa Castle, one of the actors is soon found assaulted for real.

Conan tries to find out the culprit behind the attempted murder of Harumi. Ran is sent to join Harumi to the hospital, while the others continue on the tour. Conan discovers that Harumi had actually had the original clues stashed in her bag, and pretends to voice Kogoro in telling Ran to help him. Ran informs everyone that Harumi has escaped from the hospital, so the group splits up to look for her. The culprit tries to attack Harumi, but it is Ran is disguise, and the suspect is revealed to be her fiance, who had been involved in the theft of five million yen four years ago.

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The Detective Boys participate in a kite competition, hoping to advertise their business. Ai hums a tune that gets the others curious as to what she is listening to, but she says that's a secret, challenging Conan to try to figure it out. Conan plans to have Ayumi try to record it, but she accidentally reveals to Ai the trick but then realizes she had lost her phone. During the competition, one of the guys who had attracted trouble with some of his associates as well as his wife is backing up while holding a kite, but falls over a high ledge into a river where he nearly drowns. Conan and the kids suspect foul play, especially when they discover the lengths of the rope barrier do not match.

Conan finds out that the man falling into the river wasn't an accident but a murder attempt. The main suspects are: the man's wife (who he was on the phone at the moment of the crime), his partner, and one of the contestants whose sister was having and affair with him.

The Detective Boys are wandering the streets in the residential area around Professor Agasa's house, worrying about Ai Haibara, who has gone missing since she went shopping several hours ago. At first, Genta, Mitsuhiko, and Ayumi are wondering whether Ai has become the victim of a traffic accident, but then Conan finds a cat's shawl lying on the street. Seeing this, he remembers how he, Ai, and the Professor recently met a friendly young woman named Mitsuru Higaki, along with her pet cat Chiro (who wore the shawl) and her Indian Star Tortoise. Searching the vicinity for Chiro, they find the kitten inside a well in a park, but as they try to return it, Mrs. Higaki does not answer the doorbell, so they take the cat back to Agasa's house to feed it. After contacting Detective Chiba to learn whether there have been any accidents in the area (none have), Conan tries to contact Ai through her badge, but to no avail.

Conan, Ai and the Detective Boys bump into a drug dealer on the run. The drug dealer loses his notebook and Conan finds that there's a code inside about a drug exchange which is going to take place that same day. In order to stop it, they'll first need to solve the code and find the location and exact time of drug deal. The Detective Boys contact Heiji and they determine that the code is connected to the train networks for both of their cities.

With the help of Heiji, Conan and the Junior Detectives found out that the drug exchange is going to take place in Osaka, and that the suspect will be carrying a white rose. Heiji goes to the spot and finds three possible suspects, which Heiji uses his phone camera to show the kids. However, one of the suspects is acting awfully friendly and chatty to Kazuha who happens to be in the area, and Heiji becomes infuriated.

A man running away from a police officer stumbles into the Detective Boys, grabs Ayumi as a hostage but collapses. They see a big wound on the back of his head and move him to Beika Hospital. He has no identifying papers on him, only a torn piece of magazine paper, seeing which, the police decide that he was attacked and decide to protect him. The doctor who comes out of the surgery starts acting suspicious when he hears Mauri's name.

Conan and the Detective Boys track back the places the man has been to - realizing he had the wound for quite a while - and finally find themselves at the backside of Beika Hospital.

Ran and Conan accompany Jirokichi Suzuki to Narita Airport to wait for the arrival of Munch's "Anxiety" and "Despair". Before and after packing, photos are taken to check the authencity. These two paintings were checked to have no defects, so they were packed and transferred to Suzuki Museum by a truck. The three of them get in a car and follow the truck.

Meanwhile, Munch's "Scream" arrived at Haneda Airport, and after it was checked to have no problems using the photos, it was sent to the museum by another truck. However, Hiroshi Numajiri tells Jirokichi that the truck carrying "Scream" drove off course and disappeared.

Ran, Kogoro and Conan are at the hospital where Eri has had appendix surgery. While coming out, Kogoro and Conan run into Amuro and they find a woman dead from poisoning. They figure out that the woman, Reina, was visiting a sick friend Juri, and they were having tea party with two more friends. The police interrogates each of the suspects, which reveals their possible motive; Tokie's former boyfriend was stolen by Reina and became her current husband, Katsuki lost large amount of money because of the stock that Reina recommended, and Juri's son failed an exam because he caught a cold from Reina's son. The three of them denies wanting to kill the victim, since it is not possible to switch a teacup with different colors of tea to poison her.

Bourbon and Conan help with the investigation and arrive to the conclusion that the culprit must have switched her cup with the victim in order to poison her. There is one problem though: each one of them is drinking a tea of a different color.

Ran, Conan, and Detective Boys are visiting the Beika Aquarium. While Ran is looking at the shark, she starts thinking about an old story, back when Ran and Shinichi visited the Beika Aquarium. Ran questions if Shinichi liked her at that time already as much as he does now. Conan also starts remembering the day back when Ran and him, as Shinichi, visited the place... Shinichi was waiting for Ran inside Beika Aquarium. Ran was late. She tells him that she planned to invite her mother and father to visit the Aquarium for a romantic situation. Shinichi tells Ran not to run but Ran asked why. Shinichi didn't answer her. While Shinichi and Ran were talking, he spots the dead body of Kunihiro Shumoto.

Shinichi helps the police to solve the murder case. As an apology for what happens, he promises Ran that he will take her to the new amusement park, Tropical Land, if she wins the next karate tournament.

Kogoro Mouri is asked to infiltrate a robber group. However, his identity is discovered by Mr. Head, the boss of the group. Mr. Head requests Kogoro to find the one who killed his son among the group members. If he doesn't do it or if he calls the police, then Ran will be killed.

Conan quickly follows the robbers and Kogoro through the sewer system, using shortcuts to get ahead of them. After reaching the exit, he hides in Miss Lip's car. Soon enough, the robbers and Kogoro exit the tunnel and get on the car and drive off as they're chased by the police. Using her ungodly driving skill, Miss Lip successfully causes all the police cars, among them Megure and Chiba, to crash. She also notices that the car's back weight strange, and causes the robbers to discover Conan hiding in it. Meanwhile, at the Agency, Ran receives a call from the police, with someone spying on her from afar...

As the group reaches their hideout, they find that it is made to resemble the crime scene where Mr. Pimple, who is Mr. Head's son, was killed. All of them, including Kogoro and Conan, are locked inside, until the culprit is revealed.

The Detective Boys and Conan met a group called the Detective Elderlies, who are similar to them. The Detective Elderlies said that they saw a thief with blond hair and followed him into a house, where they saw Kiyomasa Kuroda's corpse. The Detective Elderlies then seemed to have solved the case and said that the blond thief killed Kiyomasa, but Conan is doubting whether that is the truth.

A woman asks Kogoro to find her missing husband, who went to an unknown location to draw and has stopped communicating with her. Thanks to the last picture he sent to his wife, they are able to find the location. When they arrive, they find the missing man dead, with his painting being the only clue of who the culprit may be.