Superboy's anger over his non-relationship with Superman is getting out of control. He refuses to train with Black Canary, and when the team faces an opponent that even the Justice League had trouble defeating, the Boy of Steel goes rogue.

When the team investigates the disappearance of Kent Nelson (formerly Doctor Fate), the scientific-minded Wally West is forced to confront his disbelief in magic while battling Abra Kadabra and Klarion the Witch Boy, for the ultra-powerful Helmet of Fate.

Young Justice discovers that they have forgotten the last six months of their lives, including each other and a final fateful mission in Bialya. The team turns to Miss Martian to recover their memories, before it is too late for Superboy.

When Mount Justice itself is attacked, can Artemis and Robin (the two teens without super-powers) save the Team (or even themselves) from the unknown invaders?

When Plant Creatures attack major cities around the world, the team is eager to join the fight alongside the Justice League. Instead, Batman assigns them a still more dangerous task - taking out the plants' masters: a secret society of super- villains: the Injustice League!

When the Justice League is defeated during an alien invasion, the Team has to step up and fill their mentors shoes.

Superboy's "Sphere" goes through a surprising change, revealing a connection to the forever people of New Genesis.

When every adult on the planet disappears, only the team, Zatanna, and Billy Batson are left to defeat the five most powerful sorcerers on Earth. In the end, Zatanna officialy joins the team and Zatara becomes the new Doctor Fate.