A problematic former patient of Rosen's escapes as Rosen is getting acquainted with his Department of Defense liaison, and the rest of the team tries to balance their normal lives with their work as Alphas.

The Alpha team closes in on Red Flag and rescues an autistic woman, Anna, with the ability to translate any language. The team tries to figure out Red Flag’s plan while Gary bonds with Anna.

The team is ordered to find and protect Skylar, an Alpha with skills that could be dangerous in the wrong hands.

Rosen and his team find out about a secret red flag meeting. Things come to ahead for the team and the future is cloudy.