The NCIS team takes upon a strange case - a Marine's wife was murdered live on the Internet. The investigation reveals that two housewives were running a live Internet sex site and now they are both missing. While looking for them, the team will try to track down the webmaster and solve the alleged murder case.

When a 6-year-old boy informs the NCIS team that his father was kidnapped, the team discovers that the missing father is actually a Lt. Commander working on a secret project named Honor, and that he is the only one who has the code that can open the project. While Gibbs gets closer with the boy, the rest of the team discovers that the project has been hacked in and the information inside has been deleted. Is the missing man innocent or is he actually the guilty one?

When bodies of two hired assassins are delivered to the NCIS team, Ziva & Tony go undercover assuming the victim's identities in order to find the person who hired the assassins for their mission. While working on the case, Ziva & Tony spend some quality time in a luxury hotel and the attraction between them arises. Gibbs discovers that his team is not the only one working on the case.

Tony is accused of murdering a woman whos body was found at Quantico and the team must prove his innocence. All the possible evidence prove that Tony is guilty and the team will give their best to set their agent and a friend free.