Vilgax tries to get the Omnitrix for himself while Grandpa Max's strange past becomes known, causing a showdown between Vilgax and the Tennyson family.

After the battle with Vilgax, Grandpa Max retells his story to Ben about his past. He was with an organization that was not known to exist, referred to as "The Plumbers," a group of people who track down extraterrestrial life. Meanwhile, they meet Phil, an old partner of Grandpa Max. But they soon find out that he steals a device, called the Null Void Projector, to selfishly use it to make money by appearing to capture aliens that he alone released himself.

In the middle of nowhere, Ben, as Diamond Head, fights Kevin 11, who is still in his mutated form. As they fight, they are taken to a ship, where a battle between different aliens are held. But when a mechanical droid named Slix decides to create a bond with Ben and Kevin as a team, they immediately turn his idea down. But with no choice, they must find a way out. Will Ben and Kevin learn the importance of teamwork?

When Ben and Gwen argue over a birthday party to occur in the next few months, Grandpa Max is distracted by their quarreling and almost hits a young boy camper. To ensure the boy's life, they head to Camp Opinicon, only to find no people around. As they investigate the premises, they find twins, whom were also hiding from something that may have a connection to the lifeless camp. Grandpa Max readies to leave the area with the children, only to find that the RV's engine is clogged with a mysterious fungus. While the kids take in shelter in a nearby cabin, Grandpa Max is captured. Now Ben must come to the rescue to discover a new alien form, as well as a way to destroy the evil alien Myceloid Monsters and their Fungal Master, and learn the benefits of what sharing can do.

The Megacruiser flies solo in space, and inside Kevin examines the giant ice block found in space. Inside the mass, held Vilgax, and Kevin underestimated his current situation. He was very much alive and well, and they soon create a partnership after learning that they were both after the same person. On Earth, Ben plays around with the Omnitrix, hoping to find a better way of controlling it. Eventually, he finds the master control of the Omnitrix, giving him the ability to alternate between aliens, as well as prolong his duration with a form. Although his discovery has given him a stronger advantage, will it be enough to stop the danger that lies ahead?

When Ben is hypnotized, he begins breaking the law while sleepwalking. Once the evil hypnotist called Sublimino discovers the aliens at his disposal, he plots to put hundreds of people under his control forever.

The Tennysons stay in as it rains outside, and Ben plays a video game to pass the time by. When Gwen decides to join in, Ben is jealous of how she's a far superior player. Instead, Ben decides to transform to Upgrade, and merges with the game console. Gwen makes an attempt at shaking him off, but suddenly, a lightning strike causes them to transfer into the video game itself. The only way Ben can use the Omnitrix is to find coins with the different aliens on it. To get out, they must find the Upgrade coin before an evil being uses it to escape into the real world.

Ben's alien heroes are starring in a silly network cartoon called Super Alien Hero Buddy Adventures and his favorite action hero Kangaroo Commando has been pulled off the air by the same network, so Ben tries to get him back on television and get credit for the alien heroes.

While attending the Little League World Series to see his home team play, Ben discovers that the opponents are actually robots posing as kids. They also have plans to replace the President with one, as well.

Ghostfreak's return spells disaster for our heroes. Grandpa Max and Gwen must deal with the mummy alien in space while Ben deals with Ghostfreak and Dr. Vicktor on Earth. Ghostfreak then reveals his master plan: he plans to blanket the Earth with Coronium so that sunlight will not reach the planet so that he may rule. With the power of a new alien in the watch, can Ben stop Ghostfreak, and save Grandpa and Gwen?

Ben gains another Omnitrix hero to use, which he calls Ditto. Gwen can't stand being around the multiplying Dittos, and they end up giving her headaches. The Dittos, though, prove to be real helpful against Dr. Animo and his multiplying Stinkflies after he extracted some of Ditto's DNA.

After being in contact with water from the Fountain of Youth, Grandpa Max and Ben are reverted to being kids again. Now, Gwen is left to take care of them while stopping Hex from finding the fountain's source.