Goofy-bunny Mr. Whiskers meets prissy-pooch Brandy Harrington within a cargo hold of a plane. When Whiskers mistakenly opens the hatch door, the pair is dropped into the Amazon Rainforest with no way home. Desperate and angry, Brandy makes a deal with the dictator lizard Gaspar: a way back to civilization in exchange for Mr. Whiskers as his dinner. In the end, she loses her way home, but truly gains a friendship with Lola Boa and Mr. Whiskers.

Brandy volunteers to watch a crocodile’s eggs for the day, but when Lola Boa and the Toucan Twins invite her to hang out, she leaves Whiskers in charge. It goes as well as expected with Whiskers losing the eggs and mixing them up with those of other animals. Now he and Brandy must retrieve the correct babies to avid Mama Croc swallowing them whole.

While out star-gazing, the gang meets the cosmonaut monkey Boris (Greg Baldwin), having crash-landed into the jungle. Though his shuttle comes equipped with a rescue signal button, he refuses to push it and have the humans return him to space. While Brandy schemes to call for her own rescue, Mr. Whiskers is having fun playing spaceman and thwarting her.

Brandy is hosting a slumber party for girls only, kicking Whiskers out who forms one with Ed. Neither party is going too well until Whiskers begins a prank-war that quickly escalates into real trouble for everyone.

It's Brandy's birthday though she is unhappy because it's her first birthday away from her family. She believes that it's also Whiskers' birthday as well.

An Ocelot named Artaro catches Brandy's fancy, in which they fall in love and plan to go out on a date. Mr. Whiskers feels that Artaro is actually evil, and he tries to convince Brandy to not go out with him but it turns out that Mr. Whiskers is actually right.

When Brandy introduces money into the jungle, she discovers its hard to live a life of luxury when you have to earn your finances. In the end, Whiskers pulls out what appears to be a huge emerald. Brandy exclaims that she is rich.

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When Mr. Whiskers falls out of the tree for yet another time, Brandy insults him, saying that he never uses his brain. However, Mr. Whiskers' brain agrees with her, so he decides to leave his brain and head off to live his own life. Mr. Whiskers begins to become depressed as he feels lonely without his brain inside of his head, so Brandy decides to head off to find Mr. Whiskers' brain in order to return it to the rightful place where it belongs, though how will she manage to convince his brain to go back to the place he hates?

Brandy has had her eye on an attractive marsh deer named Melvin for quite some time, though when he refuses to talk to her, Brandy begins to wonder if there's something wrong with her physical appearance. When Gaspar shows up and offers her some teeth whitening merchandise, she accepts his offer and she begins to undergo procedures to make he

Gaspar and Mr. Whiskers are in an argument over whether or not Mr. Whiskers can do something. Brandy jumps to Mr. Whiskers' defense by saying he can do anything he can put his mind to, in which she agrees to a wager that she'll scrub Gaspar's floor with a toothbrush if Mr. Whiskers cannot succeed. However, when it turns out that Mr. Whiskers wants to try to build a car out of fruit and drive through the Amazon's most dangerous locations in less than a day, Brandy instantly loses confidence in Mr. Whiskers and she hires some help in order to ensure that she won't have to scrub Gaspar's floor.