Despite joining the Armed Detective Agency, Nakajima lacks conviction that he'd be of any use. Just as he's about to bid the agency farewell, a bomber takes over the agency with one of the agency employees as his hostage...!

The Agency investigates a series of disappearances in Yokohama. Kunikida enlists the help of a hacker named Taguchi Rokuzou, but all they find are photos of the victims and mention of a mysterious figure called the Azure Messenger. They follow the trail of clues to an abandoned hospital...

Francis, the leader of The Guild, a North American organization of gifted members, is the one responsible for the bounty on Atsushi's head. Fukuzawa refuses Francis's offer to buy out the Agency, but their agents begin to disappear...

Mori, the leader of the Port Mafia, sends a letter to Margaret M. and Nathaniel H., threatening to destroy them and the ship they are protecting.