Grim misses his life as the reaper of souls and, due to his bet, he cannot return to the Underworld, much to the hilarity of his Underworld co-workers. Having a sudden epiphany, Grim decides to be good and help people rather than try to take their souls. However, Grim's attempts at being good are faced with resistance from people, who are scared off by his appearance.

Billy, Mandy, Grim and Pud'n are part of the "Person Scouts" (a Boy Scouts-esque organization) and need to sell cookies in order to win a badge. However, as Billy eats all of the cookies, Grim proposes to bake their own cookies using his aunt Kali's secret recipe. The cookies are a success and the troupe wins the contest. In the end, at the Person Scouts awards ceremony, aunt Kali reveals that the secret recipe contains insects, but everyone continues eating the cookies anyway.

With Irwin not answering the phone, Billy's parents missing and Mandy saying she wants "Billy for dinner", Billy and Grim assume Mandy is a cannibal who ate Billy's parents and friends. Looking for proof, Billy and Grim find tiki figures and arrangements for a celebration in Mandy's backyard. Ultimately, it is revealed that they are just celebrating Billy's birthday. Still, Mandy burps out Irwin's glasses.

Billy and Irwin have been playing their favorite video game, Beasts and Barbarians, for three days non-stop. In an attempt to stop their video game addiction, Grim transports them all to a real-life version of the game. Seeing as Billy and Irwin are still doing good in their quest, Grim increases the difficulty by manipulating the traps himself. In the end, Billy, Mandy, and Grim return home escaping from a giant cyclops, while Irwin remains trapped.

Billy eats too much junk food that makes him feel sick. Grim prepares him a remedy using his granny's recipe, but this medicine makes a parasite to start growing in Billy's back, which Billy names Yap-yap. In the following, Billy and Yap-yap continue eating junk food, so Mandy suggest to use the antidote to the original remedy. Eventually, Yap-yap, now looking like a smaller version of Billy, detaches himself from Billy (which would have technically cured Billy without the need of him drinking the anitdote), and tries to escape from the antidote. In the end, Yap-yap drinks the antidote and is destroyed.

Billy, Mandy, and Grim eat moldy pizza leftovers, and after falling asleep, they have nightmares. Billy dreams of cute bunnies which turn into monsters; Grim dreams of an endless number of bossy Mandys; Mandy dreams of being pulled into a volcano and then commanding demons at the rhythm of music, in a scene that reminisces the Night on Bald Mountain segment of Fantasia. In the end, Mandy reveals that her dream was actually very pleasant, and she eats the last slice of the rotten pizza.

In a parody of the Harry Potter series, Grim sends Billy and Mandy to a sorcery school so the latter duo could avoid boring summer camps they were supposed to go to. The sorcery school is owned by Dean Toadblatt, an anthropomorphic frog. Billy and Mandy are sent to the most hated house on the school, Weaselthorpe, while Grim becomes a prefect for a more loved house, Gunderstank. Billy and Mandy team up with boy wizard Nigel Planter to sabotage Gunderstank. Planter takes all the credit for the sabotage (which was Mandy's idea), but he is punished once he is found out by Toadblatt.

After watching Billy and Irwin play with their "Hokey Monsters" cards (parodying the Pokémon Trading Card Game), Grim makes the monsters come to life. Soon, all the other kids want their own cards to be real too, and the city is soon under attack by a multitude of Hokey Monsters. To put an end to the mayhem, Mandy draws her own card, Mandy's Monster, which defeats all the other monsters by turning them into toast.

When Billy and Irwin exclude Mandy and Grim from helping them build a go-kart to enter the Annual Endsville Go-Kart Competition, the latter two decide to build their own. Billy-Irwin, and Mandy-Grim compete against Mindy, Sperg, and a mystery racer (Pud'n). Mindy gets stuck in highway traffic, Billy-Irwin's car is destroyed, Sperg and Grim mutually prevent each other from winning, and Pud'n wins in his little red wagon.

After missing on a school trip, Grim takes Billy, Mandy and Irwin to the "Halls of Time" for a tour. There, Billy and Irwin mess the hourglasses that symbolize each person's lifespan. When they leave, they accidentally leave their own hourglasses, including Grim's, upside down, resulting in the group getting younger as time passes. Grim allows the kids to disappear by going before birth, but he cannot restore his own hourglass to its correct position and he disappears too.

After spilling salt in a restaurant, and not throwing salt over his left shoulder, Billy starts having an unusual amount of extremely bad luck. The next day, Grim analyzes Billy and finds out he has a "Catastrophe Snail" attached to his brain, which is causing him the bad luck.

Lord Pain, a fearsome warrior from the Plain of Eternal Suffering, appears in Billy's house looking to serve his master, Grim. Lord Pain is put to clean the bathroom, and is confused as to why Billy and Mandy treat Grim the way they do. Eventually, Lord Pain realizes that Mandy is to be his real master, and prepares mashed potatoes for her.

When Billy, Mandy and Grim go playing golf, they encounter boy wizard Nigel Planter again, who is there hiding from the dark wizard Lord Moldybutt. They head back to the School of Sorcery, where they keep on running into Moldybutt, who warns them to stay away from the "Chamber Pot of Secrets" hidden in Dean Toadblatt's office. It is revealed that Lord Moldybutt is actually Toadblatt, who was disguising himself to scare off Planter. Note: The title is a spoof of Harry Potter and the Chamber of Secrets.

While reading an Underworld comic book, Billy finds an advertisement for "Chocolate Sailors", a delicious chocolate candy-which being Underworld candies are secretly hexed into enslaving the eater. Billy becomes a seller of Chocolate Sailors, but instead of selling them ends up eating them all by himself. The enchanted candies turn him into solid chocolate, and now Billy cannot stop eating himself. Billy, Mandy, and Grim go searching for the Chocolate Sailor to retrieve the antidote before Billy eats himself completely. Instead of eating the antidote, Billy eats the antidote along with other enchanted chocolates, and his head (which was all that was left of him) explodes as a result and covers Chocolate Sailor, Grim and Mandy in chocolate. Later Grim and Mandy are shown watching TV while drinking "Billy" Chocolate shakes.

When Billy finally gets a "secret decoder ring" in his Blasto Bits cereal, he receives a holographic message from a strange creature who speaks about finding the "Secret of the Universe" in an abandoned mine shaft. All the other children of Endsville, also with decoder rings, race to the mine to be the first one to get the Secret. The entire effort is revealed to be a trap laid by Lubbermouth, a worm-like creature from Grim's past, who wishes to free herself from the curse of guarding the Secret. When Mindy looks down at the pit, she becomes the new guardian of the Secret and has to stay there forever.

After Grim's robe comes out of the washing machine, Billy and Mandy find Thromnambular, a talking skull with ruby eyes and a number nine imprinted on his forehead. Grim tells them that the skull is a magical artifact imprisoned on Earth that must grant his nine wishes to be free. When Mandy asks Grim why he has not used any of the wishes, Grim tells her that the skull will corrupt the wishes and end up affecting the wisher.

When Billy jumps into a supernatural puddle (a Cosmic Sinkhole, according to Grim), it takes him to the home of Granny Applecheeks, who wants to bake him into a pie. It is up to Mandy and Grim to save him if the puddle can take them to the right place.

After Grim's scythe fails to open a portal, he decides to sharpen it, but the blade breaks. Billy, Mandy and Grim go to the Underworld to meet F (a parody of James Bond's "Q"), who is in charge of the Underworld secret gadgets. F unveils Scythe 2.0, which is a new-and-improved sentient, autonomous, thinking and feeling computerized scythe, that Grim uses while his classic scythe is being repaired. When Mandy tells Grim to do his usual humiliating chores, Grim delegates the work to Scythe 2.0, which rebels and decides to reap by itself, starting with Billy and Mandy. Grim saves the kids, takes Scythe 2.0 back to the Underworld, and returns with his old scythe.

When Billy's parents are attacked by an anaconda, Billy suggest visiting boy wizard Nigel Planter, because he can talk to snakes. Planter in fact does not speak to snakes, but to snacks, and instead he asks for Billy, Mandy and Grim's help to win the affections of Huffefnie Pfefferpfeffer, a beautiful witch in the School of Sorcery (and having a striking resemblance to Gladys). Planter tries using a romantic love potion and enchanted chocolates, but they do not work. The guys end up completely forgetting about Billy's parents.

When Billy and Irwin start making prank calls, everybody knows that Billy is behind the calls because every telephone has a caller ID. While Billy searches in Grim's trunk in the basement for something to defeat the caller ID, he finds a skull-shaped phone with no caller ID. Grim warns him to not use the phone, because it is used to call the ancient demon Cthulhu, whose sole appearance makes people go mad, and if awakened will cause the destruction of the world. Despite Grim's warning, Billy and Irwin use the phone anyway, and they are sucked into it by tentacles.

When Billy gets his kite stuck in a tree, he starts throwing objects at it to knock it down, including Mandy and a group of three boy scouts, but all objects get stuck too. Frustrated, Billy and Grim call a druid for help, who in turn trains them to become druids, so the three of them can perform a ritual. Meanwhile, inside the tree, Mandy battles a group of squirrels, and leads the scouts back to the ground. Since the druidic chants did not work against the tree, the druid goes ahead and uses a chainsaw to bring the tree down, but this gets him arrested.

When Mandy and Grim go to the warehouse store, Mandy notices that everything seems to be in order, lacking any presence of chaos. Hoss Delgado, spectral exterminator, arrives saying that everything has been that way since he started dating Eris, the goddess of chaos. Mandy assures Delgado he must break up with Eris to restore chaos, but fearing her temper, he is reluctant to do so. After failed attempts by Grim, Mandy, Billy, and Irwin to break their relationship, Delgado finally tells Eris the truth about he wanting to break up, and she complies by turning into a giant insect and devouring him.

When Billy destroys Grim's favorite childhood toy, Fancy Jake, Grim feels devastated and wishes he had never lost the limbo game that made him become Billy and Mandy's best friend forever and ever. A lawyer appears saying that although the game is legally binding while all parties remain on Earth, it is not if Grim leaves Earth. In consequence, Grim follows the lawyer's advice, opens a mystical portal, and leaves. With Grim traveling aboard his spaceship, the lawyer takes off his disguise and introduces himself as Morg, the Martian Grim Reaper, who is also Emperor of Mars and commands an army of Martian, brain-eating zombies.

As Billy behaves more reckless than ever and cannot stop breaking everything in sight, Mandy thinks he should go some place where he can release all his urge to destroy until he gets tired of it. Mandy, Grim, and Irwin go to Level 9, home of the fearsome warrior Lord Pain, to convince him to take Billy. Billy receives psychological treatment and it is revealed that his desire to destroy stems from lack of attention when he was younger. Lord Pain abducts him, and together they start destroying everything in Level 9, which seems to be is uninhabited. Billy is still not satisfied, so he and Lord Pain return to Endsville and carry on breaking everything.

As Billy, Mandy, Grim, and Irwin hang from a rope about to be eaten by a giant sea serpent, Irwin wonders how they came into that trouble. Billy and Grim each tell separate stories on how they originally became best friends forever and ever. Billy's fantastic story is about him and Mandy being space patrol officers who collect the Grim Reaper's bones, cloak, and skull to summon him; Grim tells a story on how the evil Mandy and his pet servant Billy managed to capture him inside a containment unit (parodying the Ghostbusters' ghost traps). Mandy quickly tells the real story, and footage from the first episode is seen, before the four are swallowed whole by the serpent.

When Nergal comes to tell the guys about his new pizza joint, Grim thinks he can do better by using his Granny's recipe. A pizza war ensues between Nergal's Pizza and Grim's Pizza, with each pizzeria launching TV ads and discrediting each other. Nergal Jr. uses his shape-shifting abilities to infiltrate Grim's pizza and replace Granny Grim's hot sauce with a "ghastly elixir". The result is pizzas becoming monsters and attacking the city, and the citizens developing parasites similar to Nergal. Nergal and his family leave the city just as Grim's sauce explodes.

When Billy, Mandy and Grim once again go to the beach, Grim warns Billy to avoid swimming too far, because the "undertoad", a frog-like creature, will try to drag him into the sea. Billy encounters the undertoad, and he barely makes it back to the beach. With the dangers of the sea averted, the guys go back home, but the undertoad is set on bringing Billy down, that he follows him to his house. The next day, the undertoad becomes a constant annoyance to Billy, even at school. Grim and Mandy capture the undertoad, and set sail to release him at sea, where they meat the giant Mama undertoad.

A scene of Endsville two weeks into the future shows a dystopian world ruled by the "Lord of Horror", who wields the all-powerful artifact known as "Horror's Hand". At the same time, two robotic replicas of Billy and Mandy are sent into the past, to stop the real Billy and Mandy from interfering with the current events.orror's Hand to rule the world.

On a rainy day, giant spiders appear in Billy and Mandy's school and start kidnapping the children one by one. Grim presumes this is somehow related to his past, but does not figure it out until he receives a message saying that Velma, the Spider Queen, an old good friend from high school, is responsible for it. Meanwhile, Billy meets with Jeff the Spider, who informs him that he is precisely marrying Velma. After trying to recover a talking carton of chocolate milk from Jeff, Billy and Jeff get into a fight, and Jeff looks angrier than ever before.