A certain type of android, the GA07_JL, nicknamed Jeri by its users, has been affected by a virus. Recently, all Jeri model androids have been committing "suicide".

Section 9 is called in as it may be related to a virus detected in an android at the National Assembly Building.

A former colleague of Togusa's named Yamaguchi calls and asks him to look at some sensitive data related to the Laughing Man case. Before Yamaguchi can arrive with the material, however, the car he is driving swerves off of the road and explodes.

Aramaki allows Togusa to investigate Yamaguchi's death and Togusa is able to retrieve the information that his colleague wanted him to look at. The information could implicate high-ranking officials within Police HQ.

"Tachikoma Runaway": The Tachikoma that Batou has been feeding natural oil to awakens before the other Tachikomas do and leaves the hanger to have an adventure. On the town, it meets up with a girl named Miki who is searching for her dog.

"The Movie Director's Dream": While out on its adventure, Batou's Tachikoma found a cyberbrain that has something very interesting within it. One of Section 9's lab techs has become "lost" inside the device, and it's up to the Major to bring him back.

Acting on a tip, Section 9 breaks up a cabal of thieves hell-bent on wrecking a Japanese financial institution. Shortly after the raid a Chinese intelligence official contacts Section 9 and informs them of suspicious activity that he believes may indicate an assassination attempt by Chinese Socialists on a prominent, yet reclusive, Japanese multi-millionaire.

Section 9 has uncovered Shō Kawashima's ("FAKE FOOD") external memory device on the net. Hidden in a route to the Asian matrix only accessible through the European array, Section 9 concludes that the device was hidden by Gouda. Unfortunately, Gouda has left no trace of his movements in the device.

The Major prepares to dive into the device with Bōma and Ishikawa watching her closely. However, before she can dive, Aramaki notifies her that someone even more important than the external memory device has just surfaced...

Kuze and the Major come up with a plan to save the refugees, but the chances of its success are slim. Realizing this, the Tachikomas disobey the Major's orders and come up with a plan of their own. Batou has also disobeyed the Major's orders to go to the bridge and is desperately searching for her in the ruins of Dejima. Meanwhile, the Prime Minister is frustrated with being spurned by the Chief Cabinet Secretary. Determined to be remembered as more than a mere figurehead, she takes matters into her own hands.