When a series of mysterious attacks involving Cogito infected AutoReivs occur, Re-l is assigned to investigate, and encounters a humanoid monster. Later, she is attacked by two of these monsters at her home.

Re-l struggles to convince her peers of her encounters with the monsters, which she learns are called Proxy. She is removed from the investigation and finds that Iggy has had his memories of recent events erased. Meanwhile, Vincent finds himself on the run from a proxy and then the city’s authorities.

Romdo is no longer a safe haven for Vincent. He is trying to avoid capture by the authorities. As he flees he comes across the infected AutoReiv Pino. Pino then shows him the way to escape from Romdo to the outside world. Re-l struggles to contact Vincent and uncover the true nature of his involvement with the Proxy.

Vincent and Pino are taken in by a small commune, the inhabitants of which make a living off the refuse dumped from the Dome. Meanwhile, Raul plans his move to locate and capture Vincent.

Re-l recovers from her illness. Daedalus shows her the disturbing mechanisms responsible for the Dome’s continued survival. Vincent makes his way home, slowly losing his companions along the way, ending up alone with Pino. A group of infected AutoReivs is unleashed on Re-l, Iggy, and Daedalus. The episode ends with Daedalus filling out Re-l’s death certificate.

Vincent and Pino stumbles onto war-torn Halos, where they are caught in a war between the dome’s human inhabitants and its autonomous AutoReivs.

Vincent finds a strange book store and an even stranger old man, where he discovers more about his true nature. Re-l and Iggy catch up on the Centzon (the Rabbit, the flying ship that Vincent travels by).

Finding himself in a bizarre live game show, Vincent’s trivia knowledge is put to the test as he battles for his life.

Pino explores the mysterious Smile Land with the NaKaMa, and confronts the Creator of the city.

Pieces are played and revelations uncovered as the final fight commences. Monad makes her return and tries to convince Vincent to join her.