Stardate: 48315.6. While in pursuit of a Maquis ship in a region of space known as the 'Badlands', Captain Kathryn Janeway and her crew aboard Voyager and the Maquis ship are transported 70,000 light years from home into the uncharted region of the galaxy known as the Delta Quadrant.

Stardate: Unknown. After being hit by the shockwave of a devastating planet-wide explosion, Voyager investigates. While on the surface, Janeway and Paris are accidentally 'shifted' one day into the past.

Stardate: 48546.2. In the search for omicron particles to boost the ship's energy supplies, Voyager inadvertently injures a space-faring life form.

Stardate: Unknown. Tom Paris is accused of a murder he claims he did not commit. His sentence is to re-live the last few moments of his victim's life every 14 hours through a memory transplant.

Stardate: Unknown. Upon discovering a cultural symbol drawn in the ground on a planet that was used by his ancestors to 'heal the land', Chakotay tries to contact the beings his tribe called the 'Sky Spirits.'

Stardate: Unknown. In order to help out Lon Suder, a psychopath who killed a crewmember, Tuvok performs a mind meld. Soon after he begins showing violent tendencies, which develop until he loses control.

Stardate: 49301.2. A suicidal Q threatens the future of the Q-Continuum after he requests asylum aboard Voyager.

Stardate: 49690.1. When Captain Janeway and Chakotay contract an incurable virus they are left on a planet that shield them from its effects. While Janeway searches for a cure, she begins to form a deeper relationship with her first officer. Onboard Voyager, Tuvok, who is now in command, faces a near mutiny.

Stardate: Unknown. Voyager receives a distress signal from Seska, who claims that Maje Cullah is going to take her baby away from her, a baby she says is Chakotay's. Chakotay is skeptical, but can't take the risk of abandoning his child, should it really prove to be his. Janeway authorises a mission to rescue Chakotay's child and the ship moves deep into Kazon Nistrim territory. However: was Seska for real, or is this all an elaborate trap?

Stardate: 50023.4. Voyager is captured by the Kazon and the crew are dumped on a planet in its early stages of evolution. As only Tom Paris and Lon Suder have evaded capture, it's up to them and the EMH to come up with a plan to retake the ship.