Baltar's trial testimony threatens the very stability of the fleet. Lee assists Romo Lampkin in Baltar's defense. Some in the fleet begin to feel that Baltar is divine. Though he dismisses such beliefs, Number Six suggests that the followers may know more about his true nature than Baltar does himself.

As Baltar's trial comes to a conclusion, key members of the fleet discover that they may be the Final Five Cylons. Tigh attempts to decipher the strange music he is hearing in his head, while a Cylon fleet approaches.

During the Cylon attack, Sam Anders has a strange encounter with a Cylon Raider. The crew of the Galactica view Starbuck's return with suspicion and doubt. Gaius Baltar takes refuge with a group of women who believe he has the power to heal others.

Gaius Baltar sets off a debate on religious freedom when he promotes his belief in a single God.

Specialist Tyrol continues to sink into despair after his recent loss. He becomes curious about Gaius Baltar's sermons and the following he has attracted. The crew of the Demetrius grow concerned about Kara's mental stability as an old enemy arrives with a tempting offer.

D'Anna holds President Roslin and other Colonials hostage in order to draw out the Final Five from the Colonial fleet. Col. Tigh believes he has the solution to end the standoff.

Tigh and Number Six take their first glimpse at their unborn child, Tyrol offers Adama Cylon technology in return for his fellow Cylons properly reintegrated into the fleet, and an attempted coup leads to a costly struggle to maintain civility.

Loyalties are made clear when Gaeta orchestrates a coup d'état of the Adama regime. Both prisoners and lives are taken as many of the fed up people work to take over Galactica.

Ellen escapes from Cavil only to face a momentous choice regarding the 13th Tribe and the Final Five Cylons.