It’s been three years since Naruto set out to train with Jiraiya, and he's just returned to the Hidden Leaf Village. Konohamaru immediately begs Naruto to teach him a new jutsu and he starts to go over the basics...but his explanations are very vague. Soon after, Naruto sets out on a mission, leaving Konohamaru to figure it out alone!

Tenten falls under the Infinite Tsukuyomi and wakes up in the Hidden Leaf Village. When Lee and Guy Sensei appear, Tenten is relieved to see that she is not alone. But her joy is short-lived, as both men act oddly and are dressed stylishly—just where has she been transported to?

Tsunade continues to read Jiraiya’s novel. Chunin- and jonin-level ninja have gone missing, and the Fourth Hokage, Minato, orders a search mission with teams of genin led by Guy and Kurenai. Kakashi’s Team 7 is also dispatched, but the hero Naruto Uzumaki, despite being the Hokage’s son, has the misfortune of being labeled a loser.

Naruto’s strength is recognized by his fellow genin, except Sasuke. But while Naruto enjoys a close relationship with his father, Sasuke’s father, Fugaku, constantly compares Sasuke with his older brother Itachi and barely pays attention to him…

Sasuke has left with Orochimaru, but Naruto is not about to give up. Determined to bring Sasuke back, he returns to the village with Shikamaru and the others. Meanwhile, Yahiko appears in the village, calling himself “Pain" and seeking revenge for the Hidden Leaf’s betrayal.

Kaguya Otsutsuki suddenly emerges from Madara’s body. She is the mother of Hagoromo, the Sage of the Six Paths who entrusted his powers to Naruto and Sasuke. Kaguya’s power is immense and instantly sends Naruto and Sasuke to an alternate dimension. Naruto and Sasuke are the only ones who can seal away Kaguya, but they can’t find a jutsu that works against her!

Ashura sets out on a journey, intending never to return. He ends up in a village where the people suffer from a mysterious illness.

Everyone believes that Indra is the best choice to be Hagomoro's successor, and the sage's indecision begins to cause anxiety among his followers. Finally, Ashura returns home, and Hagoromo reveals who he has chosen.

Naruto had once lived a lonely existence, ostracized by everyone. But Iruka's words and his very presence have supported Naruto to this day. As Naruto's wedding nears, Iruka begins to lose sight of what he was to Naruto, and is unsure of what to say for his message.