The sealing unit prepares the sealing barrier and the other two teams go into battle with Guren and her henchmen. Kakashi, Naruto and Sai stall Guren and Gozu while Shino prepares to go against Guren's crystal style. Meanwhile, Lee goes against Guren's other henchmen and gets trapped in their smokescreen. Can Lee find a way to defeat them?

Guren tries to attack Naruto within the Three-Tails, but, in her weakened state, is unable to do so and passes out. Meanwhile, Kakashi tells Sakura and Ino to heal Yūkimaru while he, Shizune, Kiba, Sai, and Hinata search for Naruto. Naruto and Guren soon encounter a horde of mini Three-Tails that try to attack them, but they evade them and begin to argue about Yūkimaru. While Yūkimaru awakens, Naruto summons a bunch of Shadow Clones to look for a way out of the beast's stomach. Elsewhere, Kabuto gives Curse Marks to Rinji's men.

The sealing team continue their efforts to seal the Sanbi while Kakashi and the others face against a monster fused together by Kigiri, Nurari and Kihou. Kabuto reveals Orochimaru's plans involving the Sanbi and he and Naruto begin to fight. While protecting Yukimaru, Guren fights against the real Rinji, who has been resurrected by Kabuto. When Guren sacrifices her life to save Yukimaru, Yukimaru's powers go into full effect. Now, in order to protect Yukimaru, Naruto prepares to go against the rampaging Sanbi.

Obito ignores Kakashi’s order to continue with the mission and leaves to save Rin, who was kidnapped by the Rock ninja. But the enemies detect Obito’s arrival and defeat him. Kakashi arrives at the last minute and saves Obito…

Having become genin, Jiraiya, Tsunade, and Orochimaru are assigned to the future Third Hokage's platoon. Watching Sarutobi's space/time ninjutsu, Jiraiya becomes absorbed into learning it. One day, Jiraiya loses his way and stumbles upon Myouboku Mountain. There he meets the Great Toad Sage who predicted his arrival. See the origins of the Toad Sage Jiraiya!

After failing to bring back Sasuke, the Leaf ninja start heading back to the Hidden Leaf Village. Tsunade, however, sends Katsuyu to inform them that the barrier of Mount Katsunagi of the Tsuchigumo Clan, which holds a powerful forbidden jutsu, is broken. While Kakashi and Team 8 head back to the Leaf Village, Team 7, lead by Yamato, must check out what events are taking place.

Naruto manages to find Shiranami's location but he discovers that the Shiranami he found was actually the ninja bandits disguised as him. Hotaru finds the real Shiranami where the latter convinces Hotaru not to have the forbidden jutsu removed, and takes her back to the Tsuchigumo Village. After Naruto is saved by Utakata from the ninja bandits, the two return to the Tsuchigumo Village, where they find that Shiranami has everyone in the village under his control.

Pain confronts Tsunade and questions her about Naruto's whereabouts. Tsunade argues with Pain about his motives, but Pain soon gets the info he needs from another source. Before preparing to depart, Pain unleashes a devastating attack on the village! Meanwhile, Naruto prepares to return to the Leaf Village, but he may be too late.

As the ninja of the Hidden Leaf Village work on repairing their village in the aftermath of Pain's invasion, Naruto and Sakura come across a familiar face among the carpenters: Inari and Tazuna have arrived to help out. Inari recalls what happened after Gato's death and how Naruto and Sasuke came to his rescue.

After hearing the news about Akatsuki's attack on the Hidden Leaf Village, Gaara worries about Naruto's well-being. He remembers a time in the past where Team 7 was assigned to help him out with a problem, and how nobody, especially Naruto, was eager to trust him. Yet, when his life was put in danger by people he had wronged, Naruto was the first to come to his rescue.

During the two-and-a-half-year time period in which Naruto was training under Jiraiya, the latter decided that it was time for Naruto to learn how to repel genjutsu. During this training session, the two traveled to a village which Jiraiya had previously been associated with, but they discovered that something dark was amidst.

Konohamaru's team asks Neji to talk about Naruto's heroism. Instead, Neji tells them about an incident during the Chunin exams three years prior. While Orochimaru attacked Konoha, two rogue ninja take advantage of the commotion and kidnap Hinata. Neji, Tenten, Kiba, and Akamaru rush out to save her. They're in trouble until Hiashi shows up and saves them, telling Neji that he's the beloved memory of Hiashi's younger brother. Neji realizes Naruto's speech about destiny was right; he isn't just a slave to the clan name. Konohamaru's team complains that Naruto wasn't in the story at all, and Neji cryptically answers that Naruto was the most important part.

Naruto thinks back to the time when he encountered the soul of a man named Kisuke. Kisuke didn't recall anything about who he was, but a visit to the Leaf Village's hospital revealed something startling. Meanwhile, higher-ups of the Fire Country met to decide on a new security system for the Leaf Village put together by a ninja named Sabiru. Who exactly were Kisuke and Sabiru, and what connection did the two have?

Sakura ditches her team and goes alone to Sasuke's location. Meanwhile, Madara advises Sasuke to finish off Karin, but at the last second Sakura intervenes. After so long, what interaction will take place between Sasuke and Sakura?

In Mount Myoboku, Gerotora, Fukasaku, and the Great Lord Elder are debating whether to give Naruto the key to the Tetragram Seal left behind by Jiraiya, an act that could unleash the Nine Tails.

Sixteen years ago, Fourth Hokage Minato Namikaze and his wife Kushina are expecting their first child, much to the delight of the young couple.