A fleeing Shirō is eventually cornered by Rin, who offers to spare his life if he gives her his Command Seals. However, he refuses, prompting Rin to try and kill him. Both are then distracted by a scream downstairs and he and Rin find an unconscious girl. As Rin attempts to heal her, a dagger flies through an open door, aimed for Rin, but Shirō blocks it with his arm, wounding himself in the process. He runs outside to find the female Servant, which is of the Rider class, and repels an attack by her. Shirō considers summoning Saber via Command Seal, but decides it is too risky to get her involved and resolves to confront Rider himself. Rider resumes her assault, and Shirō is nearly killed by her until Rin rescues him. At Rin's home, Shirō and Rin decide to form a temporary truce to find Rider's Master.

After a mornings training session with Saber, Shirou is then straightaway dragged off by Rin for some more training of her own. While this is going on Shirou receives a phone call from Shinji, asking Shirou to meet him at the school. Because it seemed urgent Shirou heads of to school and is greatly shocked by what he sees. Shinji shows his true colors and says how he wanted to show Rin how he was superior to Shirou and that he would defeat him here. What will happen to Shirou and does he have the will to fight off a Master and his Servant, alone?

The battle is at the turning point, where Rin is about to be squashed by Beserker and Saber is unable to save her. As a last resort Saber decides to use her Noble Phantasm to defeat Beserker, no matter how it would affect her. Realizing that Saber could disappear from this, Shirou forces her to stop and decides to take matters into his own hands.The advancement of Shirou's character as we find what he is really able to do.