Even though the lab has been shut down, Dr. Vindi manages to activate the dreaded Blue Shadow Virus, infecting Ahsoka, Padmé, and many clone troopers. The plague is fatal within 48 hours. Anakin and Obi-Wan must travel to the mysterious planet, Iego, to secure the only known antidote to the sickness. Anakin and Obi-Wan arrive on the mysterious planet to find its population living in fear of a mysterious force that has been killing anything that tries to leave their world. With the help of Jaybo Hood, a clever Iegoan boy, Anakin and Obi-Wan must solve the planet's mystery before they can leave, and before everyone infected with the Separatist virus dies!

Anakin, Obi-wan, and Ki-Adi-Mundi lead an invasion to stop Poggle the Lesser and the Geonosians from rebuilding their droid army. Things go terribly awry when Geonosian forces shoot down the Republic ships, which crash off-course. Under mounting pressure to accomplish their mission, Anakin, Obi-Wan, and Ki-Adi-Mundi each have their own set of challenges to overcome -- hordes of enemy troops, deadly traps, unforgiving terrain, and a massive energy shield.

Anakin, Ahsoka, Luminara Unduli and her Padawan, Barriss Offee, lead a mission to destroy a droid factory on Geonosis. But Poggle the Lesser has other plans as he deploys his newest weapon, the indestructible super tanks. Desperate to accomplish their mission before the foundry comes online, the Jedi devise a daring plan in which Anakin and Luminara will act as decoys, diverting the super tanks, while Ahsoka and Barriss infiltrate the plant via a labyrinth of catacombs beneath the city. The plan is risky. The stakes are high. It's their only option, but are the Padawans up to the challenge?

A Separatist blockade surrounds Christophsis. Anakin's fleet is tasked with deploying relief supplies to the surface but they are massively out-gunned and out-maneuvered by the skillful Admiral Trench. Obi-Wan arrives and unveils the Republic's new weapon: a stealth ship. The stealth ship is the last hope at besting the cunning Separatist fleet commander and aiding the battered people of Christophsis.