Fueled by vengeance and rage, the newly reunited brothers Savage Opress and Darth Maul spread terror and violence across the galaxy. As the Sith brothers forcibly recruit Hondo Ohnaka and his pirates, Obi-Wan Kenobi and Adi Gallia chase them down, leading to a deadly confrontation.

On trial for murder, Ahsoka faces her greatest challenge.

In the sterile laboratories of Kamino, the ailing clone trooper Tup and his friend ARC Trooper Fives are quarantined for examination following Tup's shocking murder of a Jedi Master. With the help of medical droid AZI-3, Fives is determined to get to the bottom of Tup's condition and uncovers a secret buried deep within the Republic's cloning program.

The peaceful world of Bardotta and its mystic ways are threatened by an ancient prophecy, and its top spiritual leaders have vanished. Queen Julia of Bardotta calls for help from her most trusted friend in the Senate, Jar Jar Binks. Recognizing the importance of Bardotta's spiritual balance, the Jedi Council sends Mace Windu to accompany Binks and investigate.