The passengers from Flight 828 find themselves under government scrutiny as they struggle to resume their lives. Michaela is forced to confront the fact that Jared is married to her once-best friend, while Ben tries to help a fellow passenger reconnect with his son. Cal is approached by an obsessive stranger, as Grace and Olive disagree on whether or not to reveal a devastating secret.

Flashbacks reveal how Grace, Olive and Jared coped with the loss of their loved ones after the disappearance of Flight 828; Ben tries to escape the voice in his mind by going on an adventure with Cal; Michaela struggles with her feelings for Jared.

With the detained passengers secretly moved and subjected to painful experimentation - and Cal's health directly linked to them - Ben takes advantage of an old friend to find out where the passengers were taken. Meanwhile, a mysterious new version of the calling pulls Michaela into a murder investigation that has deep personal ramifications for her.

Ben forms an unlikely partnership with Vance in a high-stakes race to locate the missing passengers of Flight 828. Meanwhile, Michaela helps a suicidal passenger who believes he is the Angel of Death, and Cal goes back to school, navigating both his unwanted celebrity and his former friends, who are all now 16 years old.

Michaela's mystifying, next-level calling launches her on a mission that brings her relationship with Jared to a head. Determined to protect his family, Ben explores an alternate meaning to Michaela's calling that leads him to a new alliance and a powerful new adversary. Cal's struggle with Ben's absence from home forces the Stones into an agonizing confrontation that could alter the family's fabric forever.

When Saanvi goes missing, Ben suspects a fanatical group who have become obsessed with the passengers from Flight 828. Michaela must face the consequences of her reunion with Jared. Zeke returns to New York and has an ominous calling.