With careful planning, the group manages to find and trap Hidan and Kakuzu. However, things seem to be going a bit too smoothly.

Kabuto and Yūkimaru travel to a lake, where Kabuto attempts to draw out a mysterious creature. Guren branches off from her men to find Orochimaru, who has Sasuke fight an army of Sound Ninja as training. Sasuke defeats them all, but declares that he wants to kill Itachi more than them. Naruto continues his training by summoning Gamakichi and Gamatatsu, but still doesn't understand the concept of connecting to another person's heart. Kabuto and Yūkimaru arrive at the Hot Springs Village where Naruto and Jiraiya are.

Naruto runs into Guren while trying to find Yūkimaru. Yamato and Kakashi find Naruto and bring him back to the group. Kabuto tells Guren that Yūkimaru is only a tool to control the Three-Tails, which upsets Guren. Meanwhile, Shizune, Ino, Tenten and Lee meet up with the team and tell them that their new mission is to rescue Yūkimaru and capture the Three-Tails before Orochimaru's group can capture it.

Yukimaru informs Kakashi and the others to Naruto and Guren's whereabouts and they attempt to free them with Yukimaru's help. Kiba, Tenten and Lee once again battle Kihou, Kigiri and Nurari after gaining more power from Kabuto. Naruto and Guren continue to search for a way out, coming across human-sized Sanbi-like creatures and illusions. Will Naruto and Guren ever find a way out?

In the aftermath of the destruction of the Leaf Village, Iruka thinks back to the time when the Third Hokage first gave him the task of being Naruto's homeroom teacher at the Academy, since no one else would take him in.

Iruka struggles to deal with his hate for the Nine-Tailed Fox inside Naruto as he tries to connect with Naruto after seeing him shunned by his peers.

As the fight between Sasuke and Danzo comes to a close, the latter will do whatever it takes to finish off the former. Meanwhile, Sakura and her team close in on Sasuke.

Tobi heads to Hidden Rain Village to retrieve Nagato's Rinnegan. Konan, now a former member of Akatsuki, recollects her past until Tobi arrives. Tobi asks Konan where is Nagato's Rinnegan and Konan replies that it is not located in the village. Their battle started and Tobi tells Konan that he encouraged Yahiko to form Akatsuki and he gave the Rinnegan to Nagato. Konan transforms into thousands of pieces of paper to self-destruct against Tobi, yet it fails and both survives. Konan unleashes a powerful paper technique that looks like a sea of paper beneath their feet.

After his Tailed Beast is extracted, Naruto is on the verge of dying. Sakura desperately tries to save him, but Naruto's heart gives out.

"I'll be a better shinobi than Lord Hokage! Then all the villagers will have to acknowledge my existence at last!" True to his word, Naruto has walked his own path until there are none who do not recognize that he's become a great shinobi and a hero who has saved the world. But what path will Naruto take now? How will the world of the shinobi change? This is the story of the boy who blew through the hearts of all like a "shippu," an irresistible gale. This is the story of Naruto Uzumaki.