A figure passes through the gates. It's an older Naruto, who has returned from a long training journey with Jiraiya. Naruto Uzumaki is back!

On her way to the Sand Village, Temari encounters Kakashi and his team. Kakashi admonishes Naruto when he tries to rush ahead…

Granny Chiyo and Sakura rescue Naruto from Itachi’s genjutsu. Without a moment’s delay, Kakashi begins a counterattack.

Chiyo and Sakura take cover, and Sasori wastes no time unleashing a ruthless attack.

Yamato takes temporary leadership of Team Kakashi while Sai insults both Naruto and Sakura. While preparing to set off, Sai receives an envelope from a Root shinobi containing secret orders from Danzo, and Sakura consults with Tsunade. Jiraiya then meets with Tsunade and Yamato in Kakashi's hospital room to brief Yamato on the demon fox within Naruto, detailing the "demon fox's cloak", and revealing a scar he got from Naruto when the fourth tail formed. Finally the new Team Kakashi set off on their new mission, to intercept an Akatsuki spy and gather information about Sasuke.

Naruto, in the four-tailed state, begins attacking Orochimaru with incredible force, devastating the surrounding landscape and preventing Sai and Yamato's wood clone from approaching him. The majority of Orochimaru's attacks prove to be ineffective, but Naruto also fails to kill Orochimaru as he regenerates from any injuries he sustains. Meanwhile, Kabuto advances toward Sakura and Yamato, deducing that Sasori has died. Orochimaru finally manages to strike Naruto with a sword blade from his mouth, and Sakura reacts in horror when she sees Naruto's four-tailed state.

Orochimaru and Kabuto convince Sasuke to withdraw with them, and Naruto weeps over his failure to return Sasuke to the village, but Sakura reassures him that they will bring Sasuke back together. Naruto's team reports to Tsunade about the results of the mission, and Tsunade is greatly angered over Danzo's scheme, particularly his leaking classified information to further it. Sai asks Danzo to allow him to remain with Team Kakashi, and Danzo reluctantly agrees. Sai goes on a mission with his team, having come to see them as his friends.

Kakashi is released from the hospital and begins Naruto's training program. Naruto learns that he has Wind-style chakra. Yamato helps by setting up the training field with his special jutsu. Naruto also learns that he can use his Multi Shadow Clone jutsu to speed up his training, since whatever the clones learn, the original user learns upon the clone's dispersal. Naruto and his mass of clones each take a leaf and attempt to slice it in half with wind chakra as the first step to creating his new jutsu.

Asuma’s team reaches the bounty station and ambushes Hidan. Izumo and Kotetsu attack Hidan, but are unable to kill him despite stabbing his vital organs. Asuma tells his teammates that if they retreat they will be killed and Konoha will be endangered. Shikamaru realizes that Asuma is considering sacrificing himself to help defeat the enemy, based on what he knows of Asuma's shogi strategy. Asuma begins fighting Hidan, while Shikamaru distracts him by forcing him to dodge Shadow Sewing. Hidan cuts Asuma on the cheek and steps into a circle of blood as Asuma uses a jutsu to engulf Hidan in a cloud of ash. Asuma then sets the cloud ablaze, supposedly killing Hidan.

Team Asuma continues their battle with Akatsuki's Hiden and Kakuzu.

As Kakashi and the others continue to struggle against the Akatsuki duo, Kakuzu reveals that he has not one, but five hearts! In order to kill him, one must take out all five of his hearts. Meanwhile, Shikamaru decides to challenge Hidan alone, and forces him away from his partner.

Naruto challenges Kakuzu with his new technique, the Rasen Shuriken, but can he defeat Kakuzu when his technique isn't even complete yet?

While Naruto continues his training with Gamakichi and Gamatatsu, Yamato, Sakura, and Sai prepare to leave and back-up Kakashi's group. As Guren and her gang prepares to intercept Kakashi's group, Yukimaru grows concerned for her safety and gives her a charm in hope of a safe return.

Naruto runs into Guren while trying to find Yūkimaru. Yamato and Kakashi find Naruto and bring him back to the group. Kabuto tells Guren that Yūkimaru is only a tool to control the Three-Tails, which upsets Guren. Meanwhile, Shizune, Ino, Tenten and Lee meet up with the team and tell them that their new mission is to rescue Yūkimaru and capture the Three-Tails before Orochimaru's group can capture it.

Guren tries to attack Naruto within the Three-Tails, but, in her weakened state, is unable to do so and passes out. Meanwhile, Kakashi tells Sakura and Ino to heal Yūkimaru while he, Shizune, Kiba, Sai, and Hinata search for Naruto. Naruto and Guren soon encounter a horde of mini Three-Tails that try to attack them, but they evade them and begin to argue about Yūkimaru. While Yūkimaru awakens, Naruto summons a bunch of Shadow Clones to look for a way out of the beast's stomach. Elsewhere, Kabuto gives Curse Marks to Rinji's men.

Orochimaru's body has reached its limit and the time for the ritual has come. Sasuke has other plans, however, and seeks to target a bedridden Orochimaru.

Upon encountering one another, Sasuke and Deidara engage in battle. After exchanging a few blows to test Sasuke’s strength, Deidara conjures up his specialty clay dragon and wages long-range attacks against Sasuke from high above. With Tobi’s backup support, the battle seems to be going to Deidara.

Sasuke thinks that he's finally killed Itachi with the help of his most powerful technique, Kirin, but Itachi still has one final trick up his sleeve. Having used both Tsukiyomi and Amaterasu, Itachi calls upon the power of his third and final Mangekyo ability, Susano'o. Itachi has turned the tide of the battle against Sasuke, but the latter receives aid from an unexpected source. The battle between the Uchiha brothers is nearing its shocking conclusion!

After failing to bring back Sasuke, the Leaf ninja start heading back to the Hidden Leaf Village. Tsunade, however, sends Katsuyu to inform them that the barrier of Mount Katsunagi of the Tsuchigumo Clan, which holds a powerful forbidden jutsu, is broken. While Kakashi and Team 8 head back to the Leaf Village, Team 7, lead by Yamato, must check out what events are taking place.

Naruto manages to find Shiranami's location but he discovers that the Shiranami he found was actually the ninja bandits disguised as him. Hotaru finds the real Shiranami where the latter convinces Hotaru not to have the forbidden jutsu removed, and takes her back to the Tsuchigumo Village. After Naruto is saved by Utakata from the ninja bandits, the two return to the Tsuchigumo Village, where they find that Shiranami has everyone in the village under his control.

After the peformance of the forbidden jutsu, Hotaru is horrified to see the damage the jutsu has done. Shiranami then notices the forbidden jutsu overflowing with chakra and the fact that it would destroy itself along with Hotaru. While Naruto chases the fleeing Shiranami, Utakata tries to save Hotaru using the hidden power within him. Can Utakata save Hotaru?

Shikamaru tries to decipher the dying message Jiraiya left before his death but cannot figure out what it says. Shikamaru asks for Naruto's help, thinking he might know the code. Can the saddened Naruto decipher Jiraiya's dying message?

Nagato reveals the truth about what happened to Yahiko and what made him disregard Jiraiya's ideals. With his story done, he demands to hear Naruto's answers. Will Naruto's answer be enough to convince Nagato to stop his evil plans, or will Naruto be forced to kill Nagato?

After discovering a kunai knife with a secret message on it, Naruto winds up being pursued by three kunoichi from the Hidden Waterfall Village. Iruka mangaes to find him, but when the situation grows worse, Kakashi appears to save them both.

Back before Rock Lee had his surgery, Naruto, after donning the suit given to him by Guy, set out on a mission with Sakura and Ino to obtain a special flower which was a necessary ingredient for Lee's medicine. When Naruto picked one of the flowers, however, he had to face a strange technique that had taken on the form of Gaara.

Karui decides to get information about Sasuke from Naruto by any means necessary. When Naruto refuses to sell Sasuke out, Karui takes out her frustration upon the former. Meanwhile, Danzo prepares for the Kage Summit, and determines to keep Naruto confined to the Leaf Village.

As the fight between Sasuke and Danzo comes to a close, the latter will do whatever it takes to finish off the former. Meanwhile, Sakura and her team close in on Sasuke.

Shikamaru begins to feel the pressure of shouldering the lives of his friends in the upcoming Fourth Shinobi World War. To help ease his mind, Shikaku sends his son along with Tenten on a mission to Mokuzu Island to replenish supplies.

Given the day off, Sai spends it strolling the village and drawing. He initially encounters three children that he at first finds it difficult to interact with but later realises that two of them remind him of his team-mates Naruto and Sakura. He has several flashbacks of their time together and the bonds they share. In the end he uses the doors of a destroyed house and paints a mural of Team 7 along with Sasuke holding hands.

After a long voyage at sea, Naruto’s ship finally arrives at the island of its destination. Before everyone can rejoice, a giant squid attacks the ship. Fortunately, the crew is saved by Killer Bee, the Eight Tails’ jinchuriki host.

Inside his mind, Naruto continues his battle against Nine Tails to take control of its immense power.

The Nine Tails, having been released from Madara's control, continues to wreck havoc in the city. The Third Hokage summons the Monkey King Enma and drives the Nine Tails away from the city. Minato then returns to the city and with the help of the toad Gamabunta is able to restrain the Nine Tails long enough for him to teleport it along with his family to the outskirts of the village. Kushina binds the Nine Tails and as Minato prepares to do the Reaper Death Seal to seal away half of the Nine Tails Chakra and seal the rest inside Naruto using the Eight Trigrams Seal. He also seals a bit of Kushina's chakra to help Naruto tame the Nine Tails. All of this is witnessed by the Third Hokage and a few other ninja.

Part Three of the Four Week Long Special Project for the Broadcast's Tenth Anniversary - Sasuke’s defeat to Gaara, and later Itachi, forces him to realize that he is not strong enough to get revenge against his older brother.

Taking place in the aftermath of the Kage Summit, Team Kakashi is sent out on a mission by Tsunade to a location known as "The Hole" to investigate an incident where its people were killed.

Naruto uses up the last of his chakra trying to free the Tailed Beasts from Madara’s control. When all seems lost, the Nine Tails finally acknowledges Naruto as its jinchuriki and offers its help.

Following the aftermath of the Nine-Tails incident, many on the Leaf Council voice suspicions that the Uchiha Clan were behind this tragedy. The Uchiha are then placed under 24-hour surveillance by the ANBU, which causes further tensions to arise.

Sasuke returns to the Hidden Leaf Village seeking answers, and standing before him are First Hokage Hashirama, Second Hokage Tobirama, Third Hokage Hiruzen, and Fourth Hokage Minato, all reanimated.

Naruto and Minato combine their powers to perform a Sage Jutsu attack on Obito.