Clark gains a new power - heat-vision. As he struggles to control it, Lex gets married to the new Smallville High teacher, Desiree Atkins, little does he know that she not only has an alterior motive, but that she's coming on to Clark too.

Clark has his first run-in with red kryptonite in this exploration of classic Superman mythology, turning immoral when he gets his high-school ring holding a piece of rock. Meanwhile, Lex and his father have some issues to resolve when Lionel starts taking over the manor.

A strange woman shows up claiming to be Clark's biological mother...and that his father is Lionel. Meanwhile Lana decides to meet with the man who is her biological father.

A Smallville student, Ian, displays the ability to make clones of himself and uses his power to date both Chloe and Lana. Meanwhile Lex goes to anger management class and meets an attractive local doctor.

Whitney returns to Smallville, eager to start back up where he left off with Lana. But everything isn't what it seems...

Lex hires some thugs to bug Lionel's office but things get out of control when Lionel and Martha are taken hostage, and Clark must rescue them without revealing his secrets.

Lex recovers his long-lost brother Lucas and uses him in a ploy to buy out his father's share of the company. But it soon becomes clear that Lucas isn't to be trusted, and Lex soon finds himself ousted from his own company.

Clark travels to New York to meet Dr. Swann, a brilliant scientist who holds a message for Clark from his home planet. Meanwhile Lana decides to move out of Chloe's house after they get into an argument about Clark.

After Lana is almost assaulted by a college student, Clark injures the boy while helping her. When the Kents are sued for damages that could cost them the farm, Clark tries to find a way out of the lawsuit. Meanwhile, Helen's obsessive ex-boyfriend comes to Smallville to win her back but when she turns him down, he stabs her, prompting Lex to take the law into his own hands.

Lana is haunted by the ghost of a dead friend, Emily, but the "spirit" has connections to Lionel Luthor, who is also scheming to get control of the Indian caves and "help" Lex with his wedding.

A sense of foreboding surrounds Smallville as Clark must choose between staying with Lana and his family or fulfilling his destiny to rule the Earth. Lex and Helen prepare for their marriage, and Chloe considers Lionel's offer to investigate Clark.