Team 7 sets out on their first mission. Their client is a village who has been plagued by bandits, and their mission is to eradicate them. They meet Kiri, a young girl who has just been installed as the village head after her father's sudden death. The team soon realizes that this mission is far more dangerous and complicated than first expected.

Team 7's original mission evolves into a rescue operation after Kiri is kidnapped. The team must face a formidable genjutsu user as well as a skilled sword user. Following Konohamaru's orders, the team successfully rescues Kiri. But Konohamaru is captured and the trio must battle the enemy alone while protecting Kiri.

Boruto's aunt, Hanabi Hyuga, leads an all-girl team made up of Sumire, Wasabi and Namida. They are given a mission to recover animals that someone has released from their cages at the zoo. The team sets out, but Wasabi and Namida start arguing en route, and Sumire is unable to stop them.

Round two of the Chunin Exams begins. For the second test, three-man teams must try to capture their rival team’s flags. Sarada and Mitsuki set out for enemy territory while Boruto stays behind to guard their flag. The Senka Triplets from the Hidden Mist attack, and Boruto finds himself in trouble. Boruto considers using the Scientific Ninja Tool that Katasuke gave him, but it's prohibited to do so during the exam

Naruto uses all his power to protect everyone from the Otsutsuki Clan. Boruto realizes the magnitude of his father's love for the village and its people and, at the same time, his own weakness. Watching his friends working on repairs and aiding the wounded in the aftermath of the attack, Boruto realizes the meaning of his father's words. Knowing that this experience has matured his student a little, Sasuke brings up a certain mission.

Boruto and Sarada sneak out of the village and head to Orochimaru's research lab to find clues about Mitsuki. After evading the ninja guarding the entrance, they get in. But what they observe at the facility and hear from Orochimaru makes Boruto realize that he never truly knew Mitsuki. Meanwhile, the village finds out that Boruto and Sarada have gone in search of Mitsuki, and Shikadai and his Team 10 are assigned a tracking mission to bring back them back.

Mitsuki heads toward Kokuyou and Sekiei's homeland, the Land of Earth. Meanwhile, thanks to the power of the White Snake Sage, Boruto and the others learn that Mitsuki is with Hidden Stone Ninja, and they also head for the Land of Earth. Each side has their own agenda, but will they be able to meet up successfully?

The team finds Ohnoki, but he flatly refuses to help. On top of which, they are attacked and separated. This leaves it up to each member to make it to the rendezvous point on their own. Meanwhile, Mitsuki is being shown around Kokuyou’s hideout.

After Boruto and Sarada part ways with Shikadai and the others, Kirara appears and turns them into “dolls” that must obey her, ordering the two to kill each other. Meanwhile, thinking about Boruto’s words and how his village is becoming something different than what he envisioned, Ohnoki realizes that he’s made a mistake.

Boruto runs into his teacher Sasuke, who’s returned to the village after a long absence. After listening to Boruto explain the village’s new holiday, Sasuke recalls the time he spent with his father, Fugaku, and his beloved brother Itachi, and decides to spend time with Sarada.

The cause is still unknown, but they are successively discovering birds that are under control of the power of the cursed seal. Boruto and his comrades from Team 7 are with Tosaka: They are running around together with Juugo, who can absorb the power of cursed seals. Boruto and his comrades continue to rescue the birds by using tranquilizers, so that Juugo and them won’t be controlled by the cursed seal again. However, an incident occurs where they lose all of their tranquilizers.

Team 7 is sent on a mission to help capture a jewelry thief, but they lose track of them. In the thief’s place, a cat appears. Boruto and the others decide that Mitsuki should take care of it for the time being.

Moved by Tatsumi’s efforts to accomplish her goal all by herself, Mirai decides to help her even though she's still in the middle of her mission.

Konohamaru tries to rescue Remon by checking up on Kankitsu, but he is caught and forcibly taken back to the Leaf Village. Boruto becomes suspicious when he sees Kankitsu alone and acting as if nothing has happened. He decides to investigate the situation, only to be shocked by the sight that unfolds before him! Meanwhile, Konohamaru is disciplined by the Hokage after receiving a complaint from Remon's village.

Boruto becomes fascinated by Jiraiya, Naruto's former mentor. Inspired to train, he goes to Sasuke's house, where Sarada mentions Jiraiya's novel. Convinced that reading the novel is the fastest way to learn about Jiraiya, the search for Make-Out Tactics begins!

Boruto and Naruto resume their training. Meanwhile, Sasuke is at a loss for words when Jiraiya expresses doubt about his identity. However, Jiraiya says that he will not pry if they join forces to come up with a strategy to defeat Urashiki.

Inojin approaches his parents about mastering the Mind Transfer Jutsu. Cho-Cho agrees to assist and everything is set for training to begin. With his father Sai observing, Inojin starts training with Ino. But due to his lack of confidence, Inojin's unable to execute the jutsu, which ends up irritating his mother.

Boruto's new mission is to guard Tento, who is obsessed with ninja and collecting X Cards. He begs Boruto to teach him ninja skills, and Boruto thinks this will be a good opportunity to knock some sense into Tento. Meanwhile, the Mujina Gang, which had been laying low after Team 7’s infiltration mission at Hozuki Castle, rears its ugly head.

Cho-Cho and Choji go to the sweet shop after their training session, only to be disappointed that they are unusually out of azuki bean sweets. After hearing thieves have been raiding the deliveries, Cho-Cho plans to team up with Anko Mitarashi, her friend in desserts and beloved Ninja Academy instructor, to protect the azuki beans that she loves, and capture the bandits!

Team 7 and Mugino manage to evade the gang and continue their pursuit of the culprits. But on the way they encounter a squad of skilled ninja and the situation turns explosive. Amidst the tension they learn intel about the culprits, so the team set out in pursuit, but their way is blocked by Deepa.

A memorial service is being held in remembrance of the many fallen from the Fourth Great Ninja War. Shikamaru and Ino reminisce about their fathers who died carrying out their duties until the very end in the hopes of a better future. Meanwhile, Ao, an aide to the Fifth Mizukage Mei, pays a visit to the Village Hidden in Leaves.

After finding out that Konohamaru and Mugino have gone missing, Team 7 is ordered to go to their last known location and investigate what happened. Team 7 and Katasuke arrive at the airship wreckage, but are attacked by strange puppets.

Kawaki goes into town with Naruto to get a new vase to replace the one that he broke. On the way to the Yamanaka Flower Shop, they are joined by Sarada. Unaccustomed to peaceful everyday life, he snaps at Sarada’s attempts to talk to him, and almost attacks a child for bumping into him.

Boro goes on a rampage and attempts to eliminate Boruto and the others. Boruto is beat down and falls unconscious. Then suddenly, his Karma activates and he becomes possessed by Momoshiki's spirit.

The match between Sarada and Cho-Cho begins. Kawaki has been invited by Naruto to observe, as well as Shinki and others who have come from the Hidden Sand Village. Who will emerge victorious in a battle between best friends?!

With Denki as captain, Team 5 is assigned to a mission to transport automated puppets for mining purposes to an island in the Land of Water, to test and operate them, to gather data, and to analyze the results. However, lacking physical strength, Denki isn't very useful and ends up being ridiculed. Will Denki be able to restore his reputation as a ninja and successfully complete his first mission as captain?

Now that their ship has been repaired, Boruto and the others will soon be leaving the island of shipbuilders. Ikada, now friends with Boruto, promises to achieve his dream and pay him a visit. But then Ikada’s sister Seiren appears before him and tries to drag him back home. When Ikada left home, Seiren was his only ally, so he is sad to see her so unwilling to understand his feelings. Meanwhile, Buntan, Hebiichigo, and Kyoho wait for the ship to depart. They had been promised reduced sentences for their work, but they learn that they won’t be rewarded as much as they thought!

During the battle against Funamushi, Kagura is fatally injured. Boruto becomes enraged and charges at Funamushi, activating his Karma. When the Funato squad retreats, Kagura gives Boruto and the others one final request.

Sarada, Mitsuki, and Boruto decide to meet with the Mizukage. Chojuro is heading into battle against the pirates, so Boruto and his friends ask the shipbuilder Kajiki for help. Thanks to Kajiki, they manage to reach Chojuro, but when they try to reason with him to stop the battle… Meanwhile, Ikada sails the raging seas with the intent to destroy the Shinonome 1, the brand-new power plant developed by the Land of Water.

Boruto, Sarada, and Mitsuki go meet with Ikada, who has now sided against the Land of Water. Boruto tries talking to Ikada as a friend to get him to stop fighting. But since Boruto is responsible for what happened to his sister Seiren, Ikada refuses to listen. Even still, Boruto persistently tries to reason with him. Ikada coldly proposes a certain condition.

Boruto and Kawaki join Naruto, Hinata, and Himawari on a family trip to the hot springs. The five have fun playing table tennis and enjoying the food and hot spring at the inn. Kawaki had been hesitant before the trip, not wanting to intrude, but he finds himself enjoying the time with Boruto and others. When he and Boruto learn that the inn is hosting an event which promises a premium gift, they decide to sign up and participate.

Kawaki and Himawari participate in a training session in the forest near the academy. The class is split into three-person teams and Kawaki ends up on a different team from Kae. Anxious about losing sight of Kae, Kawaki is unable to focus and ends up burdening his assigned team. Kae is lured away by a mysterious person and disappears. Fearing that she is in danger, Kawaki and Himawari rush to find her.

Hana, who has recovered from her injuries, and Kawaki, who is back guarding Kae, return to class. Life at the Academy gradually goes back to normal. Meanwhile, Hana learns that about the attempt made on Kae’s life and regrets her inability to prevent it. She returns to the scene of the incident to recount what occurred.

Naruto falls ill, and Sasuke goes to the Tatar Observatory to try to find a cure.