After being suspended for the uproar he caused at the entrance ceremony, Boruto makes his way to the academy for the first time. His classmates ostracize him for being the son of the Seventh Hokage and for being suspended. Iwabe Yuino, one of Boruto's classmates, picks a fight with him. Iwabe is an older student who has a keen sense for battle, but was held back a year for his bad behavior. At first, Boruto ignores him no matter what he says. But when he sees Iwabe punch Denki for telling him to stop, Boruto can't ignore him any longer.

The late Danzo Shimura was the founder and leader of the Foundation, an elite branch of the ANBU Black Ops. The recent incidents have been masterminded by someone who had sworn to carry on Danzo's wishes. Boruto is able to enter another world with his strange "eye." The perpetrator wields the Gozu Tennou, a weapon that relies on the power of the beast Nue, and is set on destroying the village. Boruto desperately tries to dissuade them, but can Boruto's thoughts unleash a curse from the past?!

Originally from the Village Hidden in the Sound, Mitsuki has made up his mind to become a Hidden Leaf Shinobi. In the past, having lost his memory, Mitsuki finds himself in unfamiliar surroundings, unsure of his identity and motive. Mitsuki faces a difficult decision, but his thoughts and feelings that had once been shrouded in mystery, now come to light

The Chunin Exam assembles exceptional genin from each village and pits them against each other in order to assess their abilities. Childhood friends and teammates Konohamaru, Udon and Moegi contemplate whether the genin under their guidance will be able to handle the severity of the Chunin Exam.

Boruto and Sarada convalesce at the Leaf Hospital while Mitsuki returns to Orochimaru's for treatment. For Boruto and Sarada, their inability to fight back against Deepa turns from frustration to resolve. Meanwhile, Konohamaru gives the Hokage his report regarding the incident, and in order to investigate the connection with the Kara more thoroughly, he asks that he be allowed to conduct surveillance on Victor's company.

The Yamanaka Clan, who have been tracking the village’s ingoing and outgoing traffic with their advanced sensory abilities, spearheads a plan to create a new sensory system and an operational test is conducted.

The showdown between Team 7 and Ao begins. Team 7 works together to bring Ao down with various attacks and jutsu, but he proves to be a difficult adversary due to his use of scientific ninja tools.

The match between Sarada and Cho-Cho begins. Kawaki has been invited by Naruto to observe, as well as Shinki and others who have come from the Hidden Sand Village. Who will emerge victorious in a battle between best friends?!

A swarm of dragon-beasts suddenly appears at the Observatory, throwing everything into chaos. When Sasuke and Sakura learn that the director, Zansul, has horrifying ambitions, they split up to try to stop him. Sakura gets back to the Observatory first, but the building collapses while she’s still inside. Meanwhile, Sasuke catches sight of Zansul and his accomplices. He tries to join up with Sakura but is unable to find her. Trapped, Sakura faces a precarious dilemma.

Will Sasuke and Sakura—the most powerful couple in the Village Hidden in the Leaves—be able to crush Zansul’s ambitions and safely return with the Ultra Particles to save their friend?