Moved by Tatsumi’s efforts to accomplish her goal all by herself, Mirai decides to help her even though she's still in the middle of her mission.

Boruto and Shinki bring Shukaku to Hidden Leaf Village. Upon arriving at the Uzumaki home, Himawari is completely taken with him, but Shukaku finds the entire situation irritating. When told about the day Naruto became the Seventh Hokage—and how Himawari hurt Naruto and Kurama—Shukaku comes up with an idea.

Another intense battle begins for Boruto, Sasuke and Jiraiya as they try to defend Naruto from Urashiki. Sasuke protects Naruto, allowing Boruto and Jiraiya to barely escape with him.

Hozuki Castle is a prison run by the Hidden Grass, well known for being notoriously difficult to escape from. Boruto and Mitsuki are sent there to protect Kokuri, a former member of a brutal band of robbers known as the Mujina Gang who's now targeted by assassins after betraying and deserting the gang.

The Hashirama Cell was extracted from the body of the First Hokage Senju Hashirama, and depending on how it is handled, its power to stimulate life energy to explosive proportions makes it extremely dangerous. Boruto and the others learn that the cell is in the hands of a wealthy individual who lives in Fushuu Castle, and plan on retrieving it. But there are others who are after it as well.

Shikadai, Inojin, and Cho-Cho's Team 10 is assigned to a joint mission with Shinki, Yodo, and Araya from the Hidden Sand. The mission is to find and retrieve an Otsutsuki Puppet that Shikadai had once fought. Team 10 arrives in the Land of Wind and decide to stop at a certain shop. On their way, a man passes them who piques Shikadai's interest. Upon arriving, a chilling scene confronts the trio.

Boruto, Sarada and Mitsuki are assigned to carry out Team 7’s missions by themselves until Konohamaru returns from an unexpected assignment. Boruto runs into Mugino in town and ends up going to his home at Mugino’s invitation.

After Ao's defeat, Koji Kashin appears before Team 7 and attempts to ensnare them in a sealing jutsu and eliminate them. Konohamaru breaks free and takes him on, but during the battle, the mark on Boruto's hand activates.

Wounded and hungry, Kawaki escapes from the tech lab and makes his way to a nearby town to find food. Sumire tracks him down, believing she can help him. Meanwhile, Naruto begins making his way to the area to meet with Kawaki himself.

Delta uses her destructive beam that can neutralize any regenerative power. Undaunted, Naruto forcefully suppresses it with a Giant Rasengan. He then turns up the power of his jutsu and propels it towards Delta. Unfortunately, Delta has been fitted with Scientific Ninja Tools and is able to absorb any jutsu, no matter how powerful… What will be the outcome of this battle?!

Kawaki begins to worry that his presence is endangering everyone in the Leaf Village. Just as he makes the decision to leave, he notices Himawari acting strange.

Isshiki regains his true form and goes to the Leaf Village to recapture Kawaki. The Leaf shinobi prepare for his arrival. Boruto is willing to fight, but he becomes frightened at the possibility of losing control of his Karma again.

Naruto and the others are exhausted from their battle with Isshiki. Suddenly, Boruto attacks Sasuke. Momoshiki has taken control of Boruto’s consciousness and stands before them as an enemy. Kawaki desperately calls out to Boruto to snap him out of it. Unfortunately, his words are unable to reach him. Sasuke tells Kawaki a way to bring back Boruto’s consciousness. In order to save Boruto, Kawaki attempts a risky plan using a jutsu he only recently learned. While Kawaki and Sasuke fight a desperate battle, Naruto finally runs out of strength. As his consciousness fades, he and Kurama quietly reminisce about their past.

Cho-Cho is injured in an attack by a mysterious ninja and the item that Mozuku had been holding is stolen. Captain Shikadai realizes that this was no ordinary guard mission, but one that makes them the targets of other ninja. He immediately decides to turn back toward home. But Kawaki feels for Mozuku, who was entrusted with the item that would save his people, so he ignores Shikadai's orders and pursues the ninja along with Mozuku. All alone, Kawaki faces a powerful enemy who uses a strange jutsu. Will he be able to protect Mozuku and safely return him to the Land of Calm Seas?

The Land of Water is taken over by pirates, and contact with Denki's Team 5 is lost. The new Team 7 joins up with a unit led by Kagura and sets out for Dotou Island to assist Team 5 and rescue the islanders. However, the unit is made up of Buntan, Hebiichigo, and Kyoho, who in the past had called themselves the “New Seven Ninja Swordsmen of the Mist.” Sarada and Mitsuki go ashore to scout the island while Boruto and the others stay back and watch the situation nearby.

There is a murder aboard the ship carrying the people rescued from Dotou Island, and Kyoho is the primary suspect based on the evidence. Despite his claims of innocence, there is no proof to back him up. Despite that, Kagura chooses to believe Kyoho. He places Boruto and Iwabe in charge of watching Kyoho while everyone else splits up into teams to search for any clues that may point to another culprit.

The main squad led by Funamushi is getting close to the village. Boruto and the others stand by, intending to use traps to slow down the enemy. However, the enemy sees through their plan and they are suddenly thrust into a full-scale battle. Despite being shaken, Boruto and the others fight back. Working together, they are able to handle the enemy’s overwhelming numbers. Even still, Funamushi burns with the desire for revenge and uses a powerful jutsu to corner them.

Denki and Iwabe protect the village children who accompanied them but they are captured by Funamushi and his squad. Funamushi’s squad shows up once again to attack the village. Funamushi burns with the desire to avenge Seiren as he fiercely battles Boruto and the others once more.

Boruto and his friends manage to triumph over Funamushi, but they aren’t able to savor the victory. Everyone is having a difficult time believing Denki and Iwabe are still alive days after being captured. Meanwhile, Boruto discovers a hidden side of Funamushi when he is targeted by people who looked up to the pirate, as revenge begets more revenge. Boruto has always continued to push forward until now, but this causes him to question the point of fighting.

Boruto’s desperate attempts to reason with Ikada fail and he’s unable to change his mind. He prepares himself to give his life to stop the Land of Water and the pirates from fighting. He tells Sarada and Mitsuki that they should not seek revenge if he ends up dying. However, neither of them is able to stand idly by. Will Boruto and his friends manage to stop this cycle of revenge and restore peace to the seas?!

Cho-Cho and Inojin end up making ramen to help a Rogue Shinobi and ramen shop owner by the name of Shingo Kumano who they met on a mission. They tell him that his ramen doesn’t taste bad, but that it’s missing something. Shingo asks them for advice to make it better. The former ninja takes advantage of his experience to develop a new menu. Will he be able to complete his ultimate recipe?!

Boruto and Kawaki join Naruto, Hinata, and Himawari on a family trip to the hot springs. The five have fun playing table tennis and enjoying the food and hot spring at the inn. Kawaki had been hesitant before the trip, not wanting to intrude, but he finds himself enjoying the time with Boruto and others. When he and Boruto learn that the inn is hosting an event which promises a premium gift, they decide to sign up and participate.

While strolling through the village, Kakashi and Boruto come across some people arguing. Boruto sees a gloomy-faced young couple and learns they’re engaged, and that their grandfathers are feuding. For the sake of their future, Boruto wants to help them out and asks Kakashi for advice, but Kakashi is totally uninterested. However, something seems to sway Kakashi and he decides to help…

After learning about the “Seven Mysteries” at the Ninja Academy, Himawari and several of her classmates decide to go investigate at night. Kae is among the participants, so Kawaki has no choice but to go along. But he learns that Kae does not believe in the Seven Wonders and is trying to create a fake phenomenon for the students who are looking forward to the expedition. Seeing Kae’s eagerness and excitement, Kawaki decides to help her until the end, but then something mysterious and unexpected occurs.

The Academy students are at the hospital to visit Hana, who struggles to remember the day of the attack. At the Hokage's palace, Kawaki is relieved of his mission for not reporting the presence of the assassin in time.

The assassin targeting Kae has finally been revealed. Because of their previous clashes, Kawaki knows they are a powerful foe. He decides to chase after the assassin by himself to prevent putting any more students in danger. But Kawaki finds it difficult to do that without knowing where the assassin is; what’s more, his classmates desire to work together to chase down the assassin and save Kae. And so, the entire class begins their pursuit!

Ignoring the danger to his own life, Boruto tells the other test subjects to escape while he takes on the person who may be working for Ouga. But they decide to stay and help Boruto fight the suspect.

As they search for Boruto’s whereabouts, Sarada and her team find themselves surrounded by skilled ninja and uncover unexpected information about the incident.

Seeking information related to the Ultra Particles, Sasuke searches the cellar of the room belonging to Zansul, the director of the Observatory, while a messenger of the prime minister is visiting from the capital. To buy some time, Sakura transforms into the messenger. While Zansul is distracted, Sasuke tries to sneak into the basement, but they start to get anxious when things don’t go according to plan. Meanwhile, Zansul tells Sakura something disturbing.

In order to gain the strength to fight Code, Boruto invites Kawaki to train, along with Sarada and Mitsuki. Unfortunately, because Kawaki is in a rush, they end up arguing about their training methods.

Meanwhile, at Boro’s facility, Eida has awakened. Eida is another one of Amado’s creations who has the power of the Senrigan, which allows her to see events in the present and the past. Code is powerless against her other ability…